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    OPTN optineurin [ Homo sapiens (human) ]

    Gene ID: 10133, updated on 14-May-2013
    Official Symbol
    OPTNprovided by HGNC
    Official Full Name
    optineurinprovided by HGNC
    Primary source
    HGNC:17142
    Locus tag
    RP11-730A19.1
    See related
    Ensembl:ENSG00000123240; HPRD:03891; MIM:602432; Vega:OTTHUMG00000017690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    NRP; FIP2; HIP7; HYPL; ALS12; GLC1E; TFIIIA-INTP
    Summary
    This gene encodes the coiled-coil containing protein optineurin. Optineurin may play a role in normal-tension glaucoma and adult-onset primary open angle glaucoma. Optineurin interacts with adenovirus E3-14.7K protein and may utilize tumor necrosis factor-alpha or Fas-ligand pathways to mediate apoptosis, inflammation or vasoconstriction. Optineurin may also function in cellular morphogenesis and membrane trafficking, vesicle trafficking, and transcription activation through its interactions with the RAB8, huntingtin, and transcription factor IIIA proteins. Alternative splicing results in multiple transcript variants encoding the same protein. [provided by RefSeq, Jul 2008]
    Location :
    10p13
    Sequence :
    Chromosome: 10; NC_000010.10 (13142082..13180276)
    See OPTN in Epigenomics, MapViewer

    Chromosome 10 - NC_000010.10Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 3 Neighboring gene ribosomal protein L5 pseudogene 25 Neighboring gene small nuclear ribonucleoprotein polypeptide G pseudogene 5 Neighboring gene ribosomal protein L36a pseudogene 36 Neighboring gene BTB (POZ) domain containing 7 pseudogene 1

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Amyotrophic lateral sclerosis

    Summary from GeneReviews: Amyotrophic Lateral Sclerosis Overview Go to GeneReviews

    Disease Characteristics
    Amyotrophic lateral sclerosis (ALS) is a progressive neurodegenerative disease involving both upper motor neurons (UMN) and lower motor neurons (LMN). UMN signs include hyperreflexia, extensor plantar response, increased muscle tone, and weakness in a topographic representation. LMN signs include weakness, muscle wasting, hyporeflexia, muscle cramps, and fasciculations. Initial presentation varies. Affected individuals typically present with either asymmetric focal weakness of the extremities (stumbling or poor handgrip) or bulbar findings (dysarthria, dysphagia). Other findings may include muscle fasciculations, muscle cramps, and labile affect, but not necessarily mood. Regardless of initial symptoms, atrophy and weakness eventually affect other muscles. The mean age of onset is 56 years in individuals with no known family history and 46 years in individuals with more than one affected family member (familial ALS or FALS). Average disease duration is about three years, but it can vary significantly. Death usually results from compromise of the respiratory muscles.
    Diagnosis Testing
    The diagnosis of ALS is based on clinical features, electrodiagnostic testing, and exclusion of other health conditions with related symptoms. Molecular genetic testing, available in clinical laboratories for several genes associated with ALS, plays a prominent role in diagnosis of the genetic subtype and genetic counseling.
    Genetic Counseling
    Amyotrophic lateral sclerosis can be inherited in an autosomal dominant, autosomal recessive, or X-linked manner. Genetic counseling and risk assessment depend on accurate determination of the specific genetic diagnosis.
    References

    Amyotrophic lateral sclerosis type 12

    Summary from GeneReviews: Amyotrophic Lateral Sclerosis Overview Go to GeneReviews

    Disease Characteristics
    Amyotrophic lateral sclerosis (ALS) is a progressive neurodegenerative disease involving both upper motor neurons (UMN) and lower motor neurons (LMN). UMN signs include hyperreflexia, extensor plantar response, increased muscle tone, and weakness in a topographic representation. LMN signs include weakness, muscle wasting, hyporeflexia, muscle cramps, and fasciculations. Initial presentation varies. Affected individuals typically present with either asymmetric focal weakness of the extremities (stumbling or poor handgrip) or bulbar findings (dysarthria, dysphagia). Other findings may include muscle fasciculations, muscle cramps, and labile affect, but not necessarily mood. Regardless of initial symptoms, atrophy and weakness eventually affect other muscles. The mean age of onset is 56 years in individuals with no known family history and 46 years in individuals with more than one affected family member (familial ALS or FALS). Average disease duration is about three years, but it can vary significantly. Death usually results from compromise of the respiratory muscles.
    Diagnosis Testing
    The diagnosis of ALS is based on clinical features, electrodiagnostic testing, and exclusion of other health conditions with related symptoms. Molecular genetic testing, available in clinical laboratories for several genes associated with ALS, plays a prominent role in diagnosis of the genetic subtype and genetic counseling.
    Genetic Counseling
    Amyotrophic lateral sclerosis can be inherited in an autosomal dominant, autosomal recessive, or X-linked manner. Genetic counseling and risk assessment depend on accurate determination of the specific genetic diagnosis.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    NP_068815.2 NP_002102.2 HTT    BIND  PubMed FIP-2 carboxy-terminus interacts with Huntingtin in perinuclear vesicular structures. 
    NP_068815.2 NP_005361.2 RAB8A    BIND  PubMed FIP-2 amino-terminus interacts with Rab8 in perinuclear vesicular structures. 
    Q96CV9 Q9Y3C0 CCDC53    HPRD  PubMed  
    Q96CV9 Q13045 FLII    HPRD  PubMed  
    Q96CV9 P01100 FOS    HPRD  PubMed  
    Q96CV9 Q92664 GTF3A    HPRD  PubMed  
    Q96CV9 P42858 HTT    HPRD  PubMed  
    Q96CV9 Q15907 RAB11B    HPRD  PubMed  
    Q96CV9 P61006 RAB8A    HPRD  PubMed  
    Q96CV9 Q9Y3C5 RNF11    HPRD  PubMed  
    Q96CV9 Q9HA65 TBC1D17    HPRD  PubMed  
    BioGRID:115436 BioGRID:119126 ASAP1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115436 BioGRID:32625 ATG8    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:115436 BioGRID:114946 BRE    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:115436 BioGRID:107252 CALM1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:115436 BioGRID:119225 CCDC53    BioGRID  PubMed Two-hybrid 
    BioGRID:115436 BioGRID:107460 CDKN1A    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:115436 BioGRID:112763 CNTN2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115436 BioGRID:107920 CYLD    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:115436 BioGRID:121162 EIF5A2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:115436 BioGRID:116465 GABARAP    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115436 BioGRID:117223 GABARAPL1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Two-hybrid 
    BioGRID:115436 BioGRID:116473 GABARAPL2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115436 BioGRID:109168 GRM1    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:115436 BioGRID:109314 HTT    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:115436 BioGRID:122848 KCTD17    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:115436 BioGRID:124137 MAP1LC3A    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:115436 BioGRID:123565 MAP1LC3B    BioGRID  PubMed Affinity Capture-Western; Co-localization; Protein-peptide 
    BioGRID:115436 BioGRID:110494 MPP1    BioGRID  PubMed Affinity Capture-MS; Reconstituted Complex 
    BioGRID:115436 BioGRID:119675 MPP6    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:115436 BioGRID:110730 MYO6    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:115436 BioGRID:115436 OPTN    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115436 BioGRID:119624 PIAS4    BioGRID  PubMed Two-hybrid 
    BioGRID:115436 BioGRID:111805 RAB4A    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115436 BioGRID:110382 RAB8A    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:115436 BioGRID:114274 RIPK1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:115436 BioGRID:117941 RNF11    BioGRID  PubMed Two-hybrid 
    BioGRID:115436 BioGRID:112530 SOD1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115436 BioGRID:114405 TAX1BP1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115436 BioGRID:122849 TBC1D17    BioGRID  PubMed Two-hybrid 
    BioGRID:115436 BioGRID:118878 TBK1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Co-localization; Reconstituted Complex; Two-hybrid 
    BioGRID:115436 BioGRID:112895 TFRC    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115436 BioGRID:112979 TNF    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115436 BioGRID:112986 TNFRSF1A    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115436 BioGRID:115602 TNIP1    BioGRID  PubMed Two-hybrid 
    BioGRID:115436 BioGRID:114257 TRADD    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115436 BioGRID:113039 TRAF3    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115436 BioGRID:113162 UBB    BioGRID  PubMed Co-localization 
    BioGRID:115436 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Reconstituted Complex 
    BioGRID:115436 BioGRID:124884 WDR20    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:115436 BioGRID:113361 YWHAB    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:115436 BioGRID:113364 YWHAG    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:115436 BioGRID:113365 YWHAH    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:115436 BioGRID:116168 YWHAQ    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:115436 BioGRID:113366 YWHAZ    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:115436 BioGRID:128100 ZNF384    BioGRID  PubMed Affinity Capture-MS 

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    protein C-terminus binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    G2/M transition of mitotic cell cycle TAS
    Traceable Author Statement
    more info
     
    Golgi organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Golgi ribbon formation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Golgi to plasma membrane protein transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cell death IEA
    Inferred from Electronic Annotation
    more info
     
    mitotic cell cycle TAS
    Traceable Author Statement
    more info
     
    protein targeting to Golgi IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    signal transduction TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Golgi membrane TAS
    Traceable Author Statement
    more info
     
    cytoplasm IDA
    Inferred from Direct Assay
    more info
     
    cytosol TAS
    Traceable Author Statement
    more info
     
    nucleoplasm TAS
    Traceable Author Statement
    more info
     
    perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    trans-Golgi network IDA
    Inferred from Direct Assay
    more info
     
    Preferred Names
    optineurin
    Names
    optineurin
    FIP-2
    HIP-7
    nemo-related protein
    huntingtin yeast partner L
    E3-14.7K-interacting protein
    Huntingtin interacting protein L
    huntingtin-interacting protein 7
    huntingtin-interacting protein L
    optic neuropathy-inducing protein
    transcrption factor IIIA-interacting protein
    transcription factor IIIA-interacting protein
    tumor necrosis factor alpha-inducible cellular protein containing leucine zipper domains

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_012876.1 RefSeqGene

      Range
      5001..43195
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001008211.1NP_001008212.1  optineurin

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2, 3, and 4 encode the same protein.
      Source sequence(s)
      AF070533, AF420371, BI552635
      Consensus CDS
      CCDS7094.1
      UniProtKB/Swiss-Prot
      Q96CV9
      Related
      ENSP00000368022, OTTHUMP00000019125, ENST00000378748, OTTHUMT00000046834
      Conserved Domains (2) summary
      pfam11577
      Location:37104
      Blast Score: 196
      NEMO; NF-kappa-B essential modulator NEMO
      cd09803
      Location:444507
      Blast Score: 201
      UBAN; polyubiquitin binding domain of NEMO and related proteins
    2. NM_001008212.1NP_001008213.1  optineurin

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, and 4 encode the same protein.
      Source sequence(s)
      AF070533, AF420371, AF420373, BC032762, BI552635
      Consensus CDS
      CCDS7094.1
      UniProtKB/Swiss-Prot
      Q96CV9
      Related
      ENSP00000368021, OTTHUMP00000019128, ENST00000378747, OTTHUMT00000046837
      Conserved Domains (2) summary
      pfam11577
      Location:37104
      Blast Score: 196
      NEMO; NF-kappa-B essential modulator NEMO
      cd09803
      Location:444507
      Blast Score: 201
      UBAN; polyubiquitin binding domain of NEMO and related proteins
    3. NM_001008213.1NP_001008214.1  optineurin

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, and 4 encode the same protein.
      Source sequence(s)
      AF070533, AF420371, BC032762, BI552635
      Consensus CDS
      CCDS7094.1
      UniProtKB/Swiss-Prot
      Q96CV9
      Related
      ENSP00000368027, OTTHUMP00000019124, ENST00000378752, OTTHUMT00000046833
      Conserved Domains (2) summary
      pfam11577
      Location:37104
      Blast Score: 196
      NEMO; NF-kappa-B essential modulator NEMO
      cd09803
      Location:444507
      Blast Score: 201
      UBAN; polyubiquitin binding domain of NEMO and related proteins
    4. NM_021980.4NP_068815.2  optineurin

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, and 4 encode the same protein.
      Source sequence(s)
      AF070533, AF420371, AF420372, BC032762, BI552635
      Consensus CDS
      CCDS7094.1
      UniProtKB/Swiss-Prot
      Q96CV9
      Related
      ENSP00000368032, OTTHUMP00000019127, ENST00000378757, OTTHUMT00000046836
      Conserved Domains (2) summary
      pfam11577
      Location:37104
      Blast Score: 196
      NEMO; NF-kappa-B essential modulator NEMO
      cd09803
      Location:444507
      Blast Score: 201
      UBAN; polyubiquitin binding domain of NEMO and related proteins

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000010.10 Reference GRCh37.p10 Primary Assembly

      Range
      13142082..13180276
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000142.1 Alternate HuRef

      Range
      13055075..13092916
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018921.1 Alternate CHM1_1.0

      Range
      13051493..13089693
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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