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PCGF5 polycomb group ring finger 5 [ Tursiops truncatus (common bottlenose dolphin) ]

Gene ID: 101327506, updated on 8-Mar-2024

Summary

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Gene symbol
PCGF5
Gene description
polycomb group ring finger 5
See related
EnsemblRapid:ENSTTRG00000014814
Gene type
protein coding
RefSeq status
MODEL
Organism
Tursiops truncatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Tursiops
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
13
Annotation release Status Assembly Chr Location
102 current mTurTru1.mat.Y (GCF_011762595.1) 16 NC_047049.1 (34775292..34889959, complement)
101 previous assembly NIST Tur_tru v1 (GCF_001922835.1) Unplaced Scaffold NW_017842131.1 (10045986..10150335)

Chromosome 16 - NC_047049.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 3C Neighboring gene HECT domain E3 ubiquitin protein ligase 2 Neighboring gene ADP-ribose pyrophosphatase, mitochondrial-like Neighboring gene ankyrin repeat domain 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PRC1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycomb group RING finger protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tursiops truncatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mTurTru1.mat.Y Primary Assembly

Genomic

  1. NC_047049.1 Reference mTurTru1.mat.Y Primary Assembly

    Range
    34775292..34889959 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033842601.1 → XP_033698492.1  polycomb group RING finger protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A6J3Q7X2
    Conserved Domains (3) summary
    TIGR00599
    Location:8 → 134
    rad18; DNA repair protein rad18
    cd16737
    Location:16 → 57
    RING-HC_PCGF5; RING finger found in polycomb group RING finger protein 5 (PCGF5) and similar proteins
    cd17084
    Location:135 → 255
    RAWUL_PCGF5; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 5 (PCGF5) and similar proteins

  2. XM_019943350.2 → XP_019798909.1  polycomb group RING finger protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A2U4C056
    Related
    ENSTTRP00000014044.2, ENSTTRT00000014813.2
    Conserved Domains (3) summary
    TIGR00599
    Location:8 → 135
    rad18; DNA repair protein rad18
    cd16737
    Location:16 → 57
    RING-HC_PCGF5; RING finger found in polycomb group RING finger protein 5 (PCGF5) and similar proteins
    cd17084
    Location:136 → 256
    RAWUL_PCGF5; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 5 (PCGF5) and similar proteins

  3. XM_019943288.2 → XP_019798847.1  polycomb group RING finger protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A2U4C056
    Conserved Domains (3) summary
    TIGR00599
    Location:8 → 135
    rad18; DNA repair protein rad18
    cd16737
    Location:16 → 57
    RING-HC_PCGF5; RING finger found in polycomb group RING finger protein 5 (PCGF5) and similar proteins
    cd17084
    Location:136 → 256
    RAWUL_PCGF5; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 5 (PCGF5) and similar proteins

  4. XM_033842600.1 → XP_033698491.1  polycomb group RING finger protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A6J3Q7X2
    Conserved Domains (3) summary
    TIGR00599
    Location:8 → 134
    rad18; DNA repair protein rad18
    cd16737
    Location:16 → 57
    RING-HC_PCGF5; RING finger found in polycomb group RING finger protein 5 (PCGF5) and similar proteins
    cd17084
    Location:135 → 255
    RAWUL_PCGF5; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 5 (PCGF5) and similar proteins

  5. XM_033842602.1 → XP_033698493.1  polycomb group RING finger protein 5 isoform X3

    UniProtKB/TrEMBL
    A0A6J3Q8Q2
    Conserved Domains (3) summary
    TIGR00599
    Location:8 → 135
    rad18; DNA repair protein rad18
    cd16737
    Location:16 → 57
    RING-HC_PCGF5; RING finger found in polycomb group RING finger protein 5 (PCGF5) and similar proteins
    cd17084
    Location:136 → 236
    RAWUL_PCGF5; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 5 (PCGF5) and similar proteins

  6. XM_019943238.2 → XP_019798797.1  polycomb group RING finger protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A2U4C056
    Conserved Domains (3) summary
    TIGR00599
    Location:8 → 135
    rad18; DNA repair protein rad18
    cd16737
    Location:16 → 57
    RING-HC_PCGF5; RING finger found in polycomb group RING finger protein 5 (PCGF5) and similar proteins
    cd17084
    Location:136 → 256
    RAWUL_PCGF5; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 5 (PCGF5) and similar proteins

RNA

  1. XR_004522662.1 RNA Sequence

  2. XR_004522661.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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