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LIMCH1 LIM and calponin homology domains 1 [ Tursiops truncatus (common bottlenose dolphin) ]

Gene ID: 101322048, updated on 8-Mar-2024

Summary

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Gene symbol
LIMCH1
Gene description
LIM and calponin homology domains 1
See related
EnsemblRapid:ENSTTRG00000003814
Gene type
protein coding
RefSeq status
MODEL
Organism
Tursiops truncatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Tursiops
Orthologs
human mouse all
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Genomic context

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See LIMCH1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
35
Annotation release Status Assembly Chr Location
102 current mTurTru1.mat.Y (GCF_011762595.1) 5 NC_047038.1 (65278384..65626727)
101 previous assembly NIST Tur_tru v1 (GCF_001922835.1) Unplaced Scaffold NW_017842696.1 (19830817..19934681, complement)

Chromosome 5 - NC_047038.1Genomic Context describing neighboring genes Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene ubiquitin C-terminal hydrolase L1 Neighboring gene paired like homeobox 2B Neighboring gene uncharacterized LOC117312398 Neighboring gene transmembrane protein 33

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables myosin II head/neck binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actomyosin structure organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of stress fiber assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of focal adhesion assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM and calponin homology domains-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tursiops truncatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mTurTru1.mat.Y Primary Assembly

Genomic

  1. NC_047038.1 Reference mTurTru1.mat.Y Primary Assembly

    Range
    65278384..65626727
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033856961.1 → XP_033712852.1  LIM and calponin homology domains-containing protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A6J3RE52
    Related
    ENSTTRP00000003607.2, ENSTTRT00000003836.2
    Conserved Domains (3) summary
    smart00132
    Location:1559 → 1616
    LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
    pfam15949
    Location:815 → 963
    DUF4757; Domain of unknown function (DUF4757)
    cd21278
    Location:23 → 140
    CH_LIMCH1; calponin homology (CH) domain found in LIM and calponin homology domains-containing protein 1

  2. XM_033856960.1 → XP_033712851.1  LIM and calponin homology domains-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6J3RDK2
    Related
    ENSTTRP00000018493.1, ENSTTRT00000032811.1
    Conserved Domains (4) summary
    smart00132
    Location:988 → 1045
    LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
    pfam15949
    Location:250 → 418
    DUF4757; Domain of unknown function (DUF4757)
    cd21278
    Location:23 → 140
    CH_LIMCH1; calponin homology (CH) domain found in LIM and calponin homology domains-containing protein 1
    cl20817
    Location:771 → 808
    GBP_C; Guanylate-binding protein, C-terminal domain

  3. XM_019928263.2 → XP_019783822.1  LIM and calponin homology domains-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2U4AS74
    Conserved Domains (3) summary
    smart00132
    Location:860 → 917
    LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
    pfam15949
    Location:96 → 264
    DUF4757; Domain of unknown function (DUF4757)
    cl20817
    Location:617 → 654
    GBP_C; Guanylate-binding protein, C-terminal domain

  4. XM_019928265.2 → XP_019783824.1  LIM and calponin homology domains-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2U4ASQ0
    Related
    ENSTTRP00000018224.1, ENSTTRT00000031225.1
    Conserved Domains (3) summary
    smart00132
    Location:848 → 905
    LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
    pfam15949
    Location:96 → 252
    DUF4757; Domain of unknown function (DUF4757)
    cl20817
    Location:605 → 642
    GBP_C; Guanylate-binding protein, C-terminal domain

  5. XM_019928266.2 → XP_019783825.1  LIM and calponin homology domains-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A2U4AS77
    Conserved Domains (3) summary
    smart00132
    Location:834 → 891
    LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
    pfam15949
    Location:96 → 264
    DUF4757; Domain of unknown function (DUF4757)
    cl20817
    Location:617 → 654
    GBP_C; Guanylate-binding protein, C-terminal domain

  6. XM_019928268.2 → XP_019783827.1  LIM and calponin homology domains-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A2U4AS79
    Related
    ENSTTRP00000022070.1, ENSTTRT00000037821.1
    Conserved Domains (3) summary
    smart00132
    Location:822 → 879
    LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
    pfam15949
    Location:96 → 252
    DUF4757; Domain of unknown function (DUF4757)
    cl20817
    Location:605 → 642
    GBP_C; Guanylate-binding protein, C-terminal domain
Nucleotide Protein
Heading Accession and Version

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