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CNN1 calponin 1 [ Orcinus orca (killer whale) ]

Gene ID: 101289499, updated on 8-Mar-2024

Summary

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Gene symbol
CNN1
Gene description
calponin 1
See related
EnsemblRapid:ENSOORG00010022587
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 3 NC_064561.1 (7904681..7911690)

Chromosome 3 - NC_064561.1Genomic Context describing neighboring genes Neighboring gene PRKCSH beta subunit of glucosidase II Neighboring gene zinc finger protein 653 Neighboring gene ECSIT signaling integrator Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene elongation factor 1 Neighboring gene acid phosphatase 5, tartrate resistant

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064561.1 Chromosome 3 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actomyosin structure organization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calponin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064561.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    7904681..7911690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004277405.4 → XP_004277453.1  calponin-1

    Related
    ENSOORP00010029968.1, ENSOORT00010033823.1
    Conserved Domains (3) summary
    COG5199
    Location:64 → 234
    SCP1; Calponin [Cytoskeleton]
    pfam00307
    Location:75 → 173
    CH; Calponin homology (CH) domain
    pfam00402
    Location:210 → 233
    Calponin; Calponin family repeat
Nucleotide Protein
Heading Accession and Version

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