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LIMCH1 LIM and calponin homology domains 1 [ Orcinus orca (killer whale) ]

Gene ID: 101282556, updated on 8-Mar-2024

Summary

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Gene symbol
LIMCH1
Gene description
LIM and calponin homology domains 1
See related
EnsemblRapid:ENSOORG00010023003
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
35
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 4 NC_064562.1 (88952917..89294363, complement)

Chromosome 4 - NC_064562.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125964344 Neighboring gene paired like homeobox 2B Neighboring gene uncharacterized LOC125964347 Neighboring gene ubiquitin C-terminal hydrolase L1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064562.1 Chromosome 4 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables myosin II head/neck binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actomyosin structure organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of stress fiber assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of focal adhesion assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM and calponin homology domains-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064562.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    88952917..89294363 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033425525.2 → XP_033281416.2  LIM and calponin homology domains-containing protein 1 isoform X5

    Related
    ENSOORP00010030544.1, ENSOORT00010034442.1

  2. XM_033425522.2 → XP_033281413.2  LIM and calponin homology domains-containing protein 1 isoform X3

  3. XM_004268318.3 → XP_004268366.2  LIM and calponin homology domains-containing protein 1 isoform X4

    Related
    ENSOORP00010030547.1, ENSOORT00010034445.1

  4. XM_033425519.2 → XP_033281410.2  LIM and calponin homology domains-containing protein 1 isoform X1

    Related
    ENSOORP00010030546.1, ENSOORT00010034444.1

  5. XM_049709562.1 → XP_049565519.1  LIM and calponin homology domains-containing protein 1 isoform X11

    Related
    ENSOORP00010030545.1, ENSOORT00010034443.1

  6. XM_033425520.2 → XP_033281411.2  LIM and calponin homology domains-containing protein 1 isoform X2

  7. XM_033425528.2 → XP_033281419.2  LIM and calponin homology domains-containing protein 1 isoform X8

    Related
    ENSOORP00010030542.1, ENSOORT00010034440.1

  8. XM_004268321.3 → XP_004268369.2  LIM and calponin homology domains-containing protein 1 isoform X10

    Related
    ENSOORP00010030543.1, ENSOORT00010034441.1

  9. XM_033425527.2 → XP_033281418.2  LIM and calponin homology domains-containing protein 1 isoform X7

  10. XM_033425526.2 → XP_033281417.2  LIM and calponin homology domains-containing protein 1 isoform X6

  11. XM_004268320.3 → XP_004268368.2  LIM and calponin homology domains-containing protein 1 isoform X9

Nucleotide Protein
Heading Accession and Version

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