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LOC101281953 cadherin-6 [ Orcinus orca (killer whale) ]

Gene ID: 101281953, updated on 2-Nov-2023

Summary

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Gene symbol
LOC101281953
Gene description
cadherin-6
See related
EnsemblRapid:ENSOORG00010004039
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Also known as
CDH6
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Genomic context

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Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 3 NC_064561.1 (159507044..159632567, complement)

Chromosome 3 - NC_064561.1Genomic Context describing neighboring genes Neighboring gene drosha ribonuclease III Neighboring gene mitochondrial import inner membrane translocase subunit Tim8 A-like Neighboring gene uncharacterized LOC117199998 Neighboring gene transfer RNA aspartic acid (anticodon AUC) Neighboring gene high mobility group protein B3-like Neighboring gene transmembrane protein 125

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064561.1 Chromosome 3 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adherens junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cadherin-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064561.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    159507044..159632567 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004266036.2 → XP_004266084.1  cadherin-6

    Conserved Domains (3) summary
    cd11304
    Location:163 → 264
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:79 → 157
    CA; Cadherin repeats
    pfam01049
    Location:645 → 782
    Cadherin_C; Cadherin cytoplasmic region

  2. XM_049708324.1 → XP_049564281.1  cadherin-6

    Related
    ENSOORP00010004619.1, ENSOORT00010005796.1
Nucleotide Protein
Heading Accession and Version

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