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STN1 STN1 subunit of CST complex [ Orcinus orca (killer whale) ]

Gene ID: 101278536, updated on 8-Mar-2024

Summary

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Gene symbol
STN1
Gene description
STN1 subunit of CST complex
See related
EnsemblRapid:ENSOORG00010007901
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Also known as
OBFC1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 14 NC_064572.1 (65789276..65832537, complement)

Chromosome 14 - NC_064572.1Genomic Context describing neighboring genes Neighboring gene 5'-nucleotidase, cytosolic II Neighboring gene calcium homeostasis modulator 3 Neighboring gene neuralized E3 ubiquitin protein ligase 1 Neighboring gene SH3 and PX domains 2A Neighboring gene uncharacterized LOC125960978 Neighboring gene uncharacterized LOC117199929

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064572.1 Chromosome 14 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables single-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomere capping IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CST complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of DNA replication factor A complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in chromosome, telomeric region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in site of double-strand break IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CST complex subunit STN1
Names
STN1, CST complex subunit
oligonucleotide/oligosaccharide binding fold containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064572.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    65789276..65832537 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033421088.2 → XP_033276979.1  CST complex subunit STN1 isoform X5

    Related
    ENSOORP00010009766.1, ENSOORT00010011592.1
    Conserved Domains (2) summary
    cd04483
    Location:58 → 155
    hOBFC1_like; A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be ...
    pfam09170
    Location:157 → 320
    STN1_2; CST, Suppressor of cdc thirteen homolog, complex subunit STN1

  2. XM_049696855.1 → XP_049552812.1  CST complex subunit STN1 isoform X1

  3. XM_033421089.2 → XP_033276980.1  CST complex subunit STN1 isoform X6

    Conserved Domains (2) summary
    pfam09170
    Location:104 → 281
    STN1_2; CST, Suppressor of cdc thirteen homolog, complex subunit STN1
    cl09930
    Location:58 → 99
    RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.

  4. XM_033421086.2 → XP_033276977.1  CST complex subunit STN1 isoform X3

    Conserved Domains (2) summary
    pfam09170
    Location:134 → 311
    STN1_2; CST, Suppressor of cdc thirteen homolog, complex subunit STN1
    cl09930
    Location:58 → 132
    RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.

  5. XM_033421087.2 → XP_033276978.1  CST complex subunit STN1 isoform X4

    Related
    ENSOORP00010009768.1, ENSOORT00010011594.1
    Conserved Domains (2) summary
    pfam09170
    Location:125 → 302
    STN1_2; CST, Suppressor of cdc thirteen homolog, complex subunit STN1
    cl09930
    Location:45 → 123
    RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.

  6. XM_012531590.3 → XP_012387044.1  CST complex subunit STN1 isoform X1

    Conserved Domains (2) summary
    cd04483
    Location:58 → 155
    hOBFC1_like; hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which ...
    pfam09170
    Location:157 → 335
    STN1_2; CST, Suppressor of cdc thirteen homolog, complex subunit STN1

  7. XM_033421085.2 → XP_033276976.1  CST complex subunit STN1 isoform X2

    Related
    ENSOORP00010009770.1, ENSOORT00010011596.1

RNA

  1. XR_004481309.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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