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LSAMP limbic system associated membrane protein [ Orcinus orca (killer whale) ]

Gene ID: 101277285, updated on 8-Mar-2024

Summary

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Gene symbol
LSAMP
Gene description
limbic system associated membrane protein
See related
EnsemblRapid:ENSOORG00010005125
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 5 NC_064563.1 (86770948..87426246)

Chromosome 5 - NC_064563.1Genomic Context describing neighboring genes Neighboring gene lupus La protein homolog Neighboring gene U6 spliceosomal RNA Neighboring gene growth associated protein 43 Neighboring gene 60S ribosomal protein L9-like Neighboring gene zinc finger and BTB domain containing 20

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064563.1 Chromosome 5 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
limbic system-associated membrane protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064563.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    86770948..87426246
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004278510.4 → XP_004278558.1  limbic system-associated membrane protein isoform X3

    Related
    ENSOORP00010005944.1, ENSOORT00010007342.1
    Conserved Domains (3) summary
    pfam13927
    Location:218 → 294
    Ig_3; Immunoglobulin domain
    cd00096
    Location:235 → 239
    Ig; Ig strand B [structural motif]
    cl11960
    Location:38 → 128
    Ig; Immunoglobulin domain

  2. XM_004278509.3 → XP_004278557.1  limbic system-associated membrane protein isoform X1

    Related
    ENSOORP00010005943.1, ENSOORT00010007341.1
    Conserved Domains (4) summary
    smart00408
    Location:232 → 297
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:40 → 128
    IG_like; Immunoglobulin like
    pfam07679
    Location:218 → 305
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:38 → 128
    Ig; Immunoglobulin domain

  3. XM_033403269.2 → XP_033259160.1  limbic system-associated membrane protein isoform X2

    Conserved Domains (3) summary
    pfam13927
    Location:218 → 294
    Ig_3; Immunoglobulin domain
    cd00096
    Location:235 → 239
    Ig; Ig strand B [structural motif]
    cl11960
    Location:38 → 128
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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