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NUP35 nucleoporin 35 [ Orcinus orca (killer whale) ]

Gene ID: 101273521, updated on 8-Mar-2024

Summary

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Gene symbol
NUP35
Gene description
nucleoporin 35
See related
EnsemblRapid:ENSOORG00010001352
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See NUP35 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 7 NC_064565.1 (70459529..70496011)

Chromosome 7 - NC_064565.1Genomic Context describing neighboring genes Neighboring gene NCK associated protein 1 Neighboring gene dual specificity phosphatase 19 Neighboring gene F-box only protein 5-like Neighboring gene uncharacterized LOC125965053

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064565.1 Chromosome 7 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in NLS-bearing protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear pore organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore central transport channel IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore nuclear basket IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleoporin NUP35

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064565.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    70459529..70496011
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004267406.4 → XP_004267454.1  nucleoporin NUP35 isoform X1

    Related
    ENSOORP00010001216.1, ENSOORT00010001778.1
    Conserved Domains (2) summary
    cd12722
    Location:173 → 246
    RRM_Nup53; RNA recognition motif in nucleoporin Nup53
    cl00779
    Location:132 → 212
    NQR2_RnfD_RnfE; NQR2, RnfD, RnfE family

  2. XM_033423698.2 → XP_033279589.1  nucleoporin NUP35 isoform X2

    Conserved Domains (1) summary
    cd12722
    Location:156 → 229
    RRM_Nup53; RNA recognition motif (RRM) found in nucleoporin Nup53

  3. XM_049712590.1 → XP_049568547.1  nucleoporin NUP35 isoform X2

  4. XM_033423699.2 → XP_033279590.1  nucleoporin NUP35 isoform X3

    Conserved Domains (1) summary
    cd12722
    Location:55 → 128
    RRM_Nup53; RNA recognition motif (RRM) found in nucleoporin Nup53

  5. XM_033423700.2 → XP_033279591.1  nucleoporin NUP35 isoform X3

    Conserved Domains (1) summary
    cd12722
    Location:55 → 128
    RRM_Nup53; RNA recognition motif (RRM) found in nucleoporin Nup53
Nucleotide Protein
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