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PLEKHF1 pleckstrin homology and FYVE domain containing 1 [ Orcinus orca (killer whale) ]

Gene ID: 101273172, updated on 8-Mar-2024

Summary

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Gene symbol
PLEKHF1
Gene description
pleckstrin homology and FYVE domain containing 1
See related
EnsemblRapid:ENSOORG00010004835
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 20 NC_064578.1 (38671113..38679424)

Chromosome 20 - NC_064578.1Genomic Context describing neighboring genes Neighboring gene V-set and transmembrane domain containing 2B Neighboring gene POP4 homolog, ribonuclease P/MRP subunit Neighboring gene chromosome 20 C19orf12 homolog Neighboring gene uncharacterized LOC125962691

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064578.1 Chromosome 20 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pleckstrin homology domain-containing family F member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064578.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    38671113..38679424
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004284865.4 → XP_004284913.1  pleckstrin homology domain-containing family F member 1

    See identical proteins and their annotated locations for XP_004284913.1

    Conserved Domains (2) summary
    cd01218
    Location:7 → 129
    PH_Phafin2-like; Phafin2 (also called EAPF, FLJ13187, ZFYVE18 or PLEKHF2) Pleckstrin Homology (PH) domain
    cd15754
    Location:148 → 211
    FYVE_PKHF1; FYVE domain found in protein containing both PH and FYVE domains 1 (phafin-1) and similar proteins

  2. XM_033415004.2 → XP_033270895.1  pleckstrin homology domain-containing family F member 1

    Related
    ENSOORP00010005545.1, ENSOORT00010006898.1
    Conserved Domains (2) summary
    cd01218
    Location:7 → 129
    PH_Phafin2-like; Phafin2 (also called EAPF, FLJ13187, ZFYVE18 or PLEKHF2) Pleckstrin Homology (PH) domain
    cd15754
    Location:148 → 211
    FYVE_PKHF1; FYVE domain found in protein containing both PH and FYVE domains 1 (phafin-1) and similar proteins
Nucleotide Protein
Heading Accession and Version

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