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SYTL1 synaptotagmin like 1 [ Orcinus orca (killer whale) ]

Gene ID: 101271243, updated on 8-Mar-2024

Summary

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Gene symbol
SYTL1
Gene description
synaptotagmin like 1
See related
EnsemblRapid:ENSOORG00010017389
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 1 NC_064559.1 (191481286..191489858, complement)

Chromosome 1 - NC_064559.1Genomic Context describing neighboring genes Neighboring gene ficolin 3 Neighboring gene mitogen-activated protein kinase kinase kinase 6 Neighboring gene transmembrane protein 222 Neighboring gene WD and tetratricopeptide repeats 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064559.1 Chromosome 1 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables neurexin family protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in exocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptotagmin-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064559.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    191481286..191489858 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004266615.3 → XP_004266663.1  synaptotagmin-like protein 1 isoform X2

    Related
    ENSOORP00010022879.1, ENSOORT00010026014.1
    Conserved Domains (3) summary
    cd04020
    Location:402 → 558
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cl14603
    Location:270 → 389
    C2; C2 domain
    cl22851
    Location:35 → 99
    PHD_SF; PHD finger superfamily

  2. XM_033422470.2 → XP_033278361.1  synaptotagmin-like protein 1 isoform X1

    Conserved Domains (4) summary
    cd04020
    Location:402 → 566
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    PHA03169
    Location:61 → 230
    PHA03169; hypothetical protein; Provisional
    cl14603
    Location:270 → 389
    C2; C2 domain
    cl22851
    Location:35 → 99
    PHD_SF; PHD finger superfamily

  3. XM_049712100.1 → XP_049568057.1  synaptotagmin-like protein 1 isoform X1

Nucleotide Protein
Heading Accession and Version

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