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LOC101246607 protein RADIALIS-like 3 [ Solanum lycopersicum (tomato) ]

Gene ID: 101246607, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101246607
Gene description
protein RADIALIS-like 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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Location:
chromosome: 12
Exon count:
2
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 12 NC_015449.3 (65286585..65288422, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 12 NC_015449.2 (64305665..64307365, complement)

Chromosome 12 - NC_015449.3Genomic Context describing neighboring genes Neighboring gene protein RADIALIS-like 5 Neighboring gene sugar transporter ERD6-like 6-like Neighboring gene uncharacterized LOC109119028 Neighboring gene peptidyl-prolyl cis-trans isomerase CYP59-like Neighboring gene ornithine carbamoyltransferase, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein RADIALIS-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015449.3 Reference SL3.0 Primary Assembly

    Range
    65286585..65288422 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019211462.2 → XP_019067007.1  protein RADIALIS-like 3

    UniProtKB/TrEMBL
    K4DGZ0
    Conserved Domains (1) summary
    cd00167
    Location:3 → 50
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
Nucleotide Protein
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