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SOD superoxide dismutase [Cu-Zn]-like [ Cucumis sativus (cucumber) ]

Gene ID: 101215417, updated on 14-Dec-2023

Summary

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Gene symbol
SOD
Gene description
superoxide dismutase [Cu-Zn]-like
Locus tag
Csa_006956
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 1 NC_026655.2 (24887774..24890825)
101 previous assembly ASM407v2 (GCF_000004075.2) 1 NC_026655.1 (21403473..21406484)

Chromosome 1 - NC_026655.2Genomic Context describing neighboring genes Neighboring gene protein CANDIDATE G-PROTEIN COUPLED RECEPTOR 2 Neighboring gene 40S ribosomal protein S25-2 Neighboring gene sodium/hydrogen exchanger 2 Neighboring gene probable serine/threonine-protein kinase At1g54610

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables superoxide dismutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in removal of superoxide radicals IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
superoxide dismutase [Cu-Zn]-like
Names
cytosolic superoxide dismutase
NP_001267697.1
XP_011658153.1
XP_011658519.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001280768.1 → NP_001267697.1  superoxide dismutase [Cu-Zn]-like

    See identical proteins and their annotated locations for NP_001267697.1

    Status: PROVISIONAL

    Source sequence(s)
    EU407180
    UniProtKB/TrEMBL
    B1PE19
    Conserved Domains (1) summary
    PLN02386
    Location:1 → 152
    PLN02386; superoxide dismutase [Cu-Zn]

RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026655.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    24887774..24890825
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011659851.2 → XP_011658153.1  superoxide dismutase [Cu-Zn]-like isoform X1

    See identical proteins and their annotated locations for XP_011658153.1

    UniProtKB/TrEMBL
    B1PE19
    Conserved Domains (1) summary
    PLN02386
    Location:1 → 152
    PLN02386; superoxide dismutase [Cu-Zn]

  2. XM_011660217.2 → XP_011658519.1  superoxide dismutase [Cu-Zn]-like isoform X1

    See identical proteins and their annotated locations for XP_011658519.1

    UniProtKB/TrEMBL
    B1PE19
    Conserved Domains (1) summary
    PLN02386
    Location:1 → 152
    PLN02386; superoxide dismutase [Cu-Zn]
Nucleotide Protein
Heading Accession and Version

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