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ntng1a netrin g1a [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101172203, updated on 8-Mar-2024

Summary

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Gene symbol
ntng1a
Gene description
netrin g1a
See related
EnsemblRapid:ENSORLG00000029618
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
ntng1
Orthologs
human zebrafish all
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Genomic context

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See ntng1a in Genome Data Viewer
Location:
chromosome: 20
Exon count:
12
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 20 NC_019878.2 (11462877..11611988)
102 previous assembly ASM31367v1 (GCF_000313675.1) 20 NC_019878.1 (9237290..9395771)

Chromosome 20 - NC_019878.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111946681 Neighboring gene protein arginine methyltransferase 6 Neighboring gene uncharacterized LOC111946673 Neighboring gene vav guanine nucleotide exchange factor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
netrin-G1
Names
netrin G1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019878.2 Reference ASM223467v1 Primary Assembly

    Range
    11462877..11611988
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023950091.1 → XP_023805859.1  netrin-G1 isoform X1

    UniProtKB/TrEMBL
    A0A3P9K8J2
    Conserved Domains (2) summary
    cd00055
    Location:422 → 465
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:70 → 297
    Laminin_N; Laminin N-terminal (Domain VI)

  2. XM_023950095.1 → XP_023805863.1  netrin-G1 isoform X4

    UniProtKB/TrEMBL
    A0A3P9IRK2
    Related
    ENSORLP00000034352.2, ENSORLT00000040904.2
    Conserved Domains (3) summary
    cd00054
    Location:410 → 434
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:298 → 344
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:70 → 297
    Laminin_N; Laminin N-terminal (Domain VI)

  3. XM_023950097.1 → XP_023805865.1  netrin-G1 isoform X6

    UniProtKB/TrEMBL
    A0A3B3I2P4, A0A3P9IRK2
    Related
    ENSORLP00000038083.1, ENSORLT00000043466.2
    Conserved Domains (3) summary
    cd00054
    Location:390 → 414
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:298 → 344
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:70 → 297
    Laminin_N; Laminin N-terminal (Domain VI)

  4. XM_023950096.1 → XP_023805864.1  netrin-G1 isoform X5

    UniProtKB/TrEMBL
    A0A3P9IRK2, A0A3P9K7P2
    Conserved Domains (3) summary
    cd00054
    Location:395 → 419
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:298 → 344
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:70 → 297
    Laminin_N; Laminin N-terminal (Domain VI)

  5. XM_023950090.1 → XP_023805858.1  netrin-G1 isoform X1

    UniProtKB/TrEMBL
    A0A3P9K8J2
    Conserved Domains (2) summary
    cd00055
    Location:422 → 465
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:70 → 297
    Laminin_N; Laminin N-terminal (Domain VI)

  6. XM_023950093.1 → XP_023805861.1  netrin-G1 isoform X2

    UniProtKB/TrEMBL
    A0A3P9H115, A0A3P9K8A4
    Conserved Domains (2) summary
    cd00055
    Location:298 → 344
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:70 → 297
    Laminin_N; Laminin N-terminal (Domain VI)

  7. XM_023950094.1 → XP_023805862.1  netrin-G1 isoform X3

    UniProtKB/TrEMBL
    A0A3B3HAH7, A0A3P9H115, A0A3P9K8A4
    Related
    ENSORLP00000028852.1, ENSORLT00000038390.2
    Conserved Domains (2) summary
    cd00055
    Location:366 → 409
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:70 → 297
    Laminin_N; Laminin N-terminal (Domain VI)

  8. XM_023950098.1 → XP_023805866.1  netrin-G1 isoform X7

    UniProtKB/TrEMBL
    A0A3B3HRD7, A0A3P9IRT6, A0A3P9K882
    Conserved Domains (3) summary
    cd00054
    Location:375 → 399
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:298 → 344
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:70 → 297
    Laminin_N; Laminin N-terminal (Domain VI)

  9. XM_023950092.1 → XP_023805860.1  netrin-G1 isoform X1

    UniProtKB/TrEMBL
    A0A3P9K8J2
    Related
    ENSORLP00000054436.1, ENSORLT00000060603.1
    Conserved Domains (2) summary
    cd00055
    Location:422 → 465
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:70 → 297
    Laminin_N; Laminin N-terminal (Domain VI)
Nucleotide Protein
Heading Accession and Version

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