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fam13b family with sequence similarity 13 member B [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101169952, updated on 8-Mar-2024

Summary

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Gene symbol
fam13b
Gene description
family with sequence similarity 13 member B
See related
EnsemblRapid:ENSORLG00000000207
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 10
Exon count:
24
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 10 NC_019868.2 (5488538..5546364)
102 previous assembly ASM31367v1 (GCF_000313675.1) 10 NC_019868.1 (670926..730215)

Chromosome 10 - NC_019868.2Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A0-like Neighboring gene chemokine (C-X-C motif) ligand 14 Neighboring gene kelch-like family member 3 Neighboring gene heterogeneous nuclear ribonucleoprotein A0-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein FAM13B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019868.2 Reference ASM223467v1 Primary Assembly

    Range
    5488538..5546364
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020706382.2 → XP_020562041.1  protein FAM13B isoform X1

    UniProtKB/TrEMBL
    H2L3D9
    Conserved Domains (1) summary
    cl02570
    Location:21 → 210
    RhoGAP; GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to ...

  2. XM_011479846.3 → XP_011478148.1  protein FAM13B isoform X2

    UniProtKB/TrEMBL
    H2L3D9
    Conserved Domains (1) summary
    cl02570
    Location:21 → 210
    RhoGAP; RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when ...

  3. XM_011479849.3 → XP_011478151.1  protein FAM13B isoform X5

    UniProtKB/TrEMBL
    A0A3P9LY76
    Related
    ENSORLP00000038286.2, ENSORLT00000042801.2
    Conserved Domains (1) summary
    cl02570
    Location:21 → 210
    RhoGAP; RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when ...

  4. XM_020706383.2 → XP_020562042.1  protein FAM13B isoform X3

    UniProtKB/TrEMBL
    H2L3D9
    Related
    ENSORLP00000000257.2, ENSORLT00000000257.3
    Conserved Domains (1) summary
    cl02570
    Location:21 → 210
    RhoGAP; GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to ...

  5. XM_020706384.2 → XP_020562043.1  protein FAM13B isoform X4

    UniProtKB/TrEMBL
    H2L3D9
    Conserved Domains (1) summary
    cl02570
    Location:21 → 195
    RhoGAP; GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to ...

  6. XM_020706385.2 → XP_020562044.1  protein FAM13B isoform X6

    UniProtKB/TrEMBL
    A0A3B3I877
    Related
    ENSORLP00000040336.2, ENSORLT00000034089.2
    Conserved Domains (1) summary
    cl02570
    Location:21 → 210
    RhoGAP; GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to ...
Nucleotide Protein
Heading Accession and Version

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