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rnf217 ring finger protein 217 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101169898, updated on 8-Mar-2024

Summary

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Gene symbol
rnf217
Gene description
ring finger protein 217
See related
EnsemblRapid:ENSORLG00000022414
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 24
Exon count:
7
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 24 NC_019882.2 (15643982..15661757, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 24 NC_019882.1 (15698152..15720536, complement)

Chromosome 24 - NC_019882.2Genomic Context describing neighboring genes Neighboring gene tpd52 like 1 Neighboring gene HD domain containing 2 Neighboring gene sodium/potassium transporting ATPase interacting 2 Neighboring gene triadin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable E3 ubiquitin-protein ligase RNF217

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019882.2 Reference ASM223467v1 Primary Assembly

    Range
    15643982..15661757 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004083852.4 → XP_004083900.1  probable E3 ubiquitin-protein ligase RNF217

    UniProtKB/TrEMBL
    A0A3B3IAF1, A0A3P9LN45
    Related
    ENSORLP00000041044.2, ENSORLT00000045266.2
    Conserved Domains (2) summary
    smart00647
    Location:347 → 411
    IBR; In Between Ring fingers
    pfam01485
    Location:433 → 471
    IBR; IBR domain, a half RING-finger domain
Nucleotide Protein
Heading Accession and Version

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