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pdss1 prenyl (decaprenyl) diphosphate synthase, subunit 1 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101168998, updated on 8-Mar-2024

Summary

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Gene symbol
pdss1
Gene description
prenyl (decaprenyl) diphosphate synthase, subunit 1
See related
EnsemblRapid:ENSORLG00000012939
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See pdss1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
11
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 20 NC_019878.2 (23046360..23051338, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 20 NC_019878.1 (21773804..21778782, complement)

Chromosome 20 - NC_019878.2Genomic Context describing neighboring genes Neighboring gene microtubule associated serine/threonine kinase-like Neighboring gene acyl-CoA binding domain containing 5a Neighboring gene abl-interactor 1a Neighboring gene amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein Neighboring gene uncharacterized LOC110017251

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables prenyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isoprenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquinone biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
decaprenyl-diphosphate synthase subunit 1
Names
decaprenyl diphosphate synthase subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019878.2 Reference ASM223467v1 Primary Assembly

    Range
    23046360..23051338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004081174.3 → XP_004081222.1  decaprenyl-diphosphate synthase subunit 1

    UniProtKB/TrEMBL
    A0A3B3H8L1, A0A3P9LRP3
    Related
    ENSORLP00000016218.3, ENSORLT00000016219.3
    Conserved Domains (2) summary
    PLN02890
    Location:26 → 419
    PLN02890; geranyl diphosphate synthase
    cl00210
    Location:94 → 417
    Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1
Nucleotide Protein
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