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rlim ring finger protein, LIM domain interacting [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101168551, updated on 8-Mar-2024

Summary

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Gene symbol
rlim
Gene description
ring finger protein, LIM domain interacting
See related
EnsemblRapid:ENSORLG00000026942
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 10 NC_019868.2 (17954334..17960553)
102 previous assembly ASM31367v1 (GCF_000313675.1) 10 NC_019868.1 (13751120..13755998)

Chromosome 10 - NC_019868.2Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family B (MDR/TAP), member 7 Neighboring gene neurite extension and migration factor b Neighboring gene glyoxalase domain containing 5 Neighboring gene immunoresponsive gene 1, like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in random inactivation of X chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RLIM

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019868.2 Reference ASM223467v1 Primary Assembly

    Range
    17954334..17960553
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023959254.1 → XP_023815022.1  E3 ubiquitin-protein ligase RLIM

    UniProtKB/TrEMBL
    A0A3B3HS71, A0A3P9H575
    Conserved Domains (1) summary
    cl17238
    Location:595 → 639
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  2. XM_011480290.3 → XP_011478592.1  E3 ubiquitin-protein ligase RLIM

    See identical proteins and their annotated locations for XP_011478592.1

    UniProtKB/TrEMBL
    A0A3B3HS71, A0A3P9H575
    Conserved Domains (1) summary
    cl17238
    Location:595 → 639
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  3. XM_011480289.3 → XP_011478591.1  E3 ubiquitin-protein ligase RLIM

    See identical proteins and their annotated locations for XP_011478591.1

    UniProtKB/TrEMBL
    A0A3B3HS71, A0A3P9H575
    Related
    ENSORLP00000034163.1, ENSORLT00000029512.2
    Conserved Domains (1) summary
    cl17238
    Location:595 → 639
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
Heading Accession and Version

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