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asxl1 ASXL transcriptional regulator 1 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101167689, updated on 8-Mar-2024

Summary

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Gene symbol
asxl1
Gene description
ASXL transcriptional regulator 1
See related
EnsemblRapid:ENSORLG00000020127
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 7 NC_019865.2 (30120247..30148870, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) Unplaced Scaffold NW_004095167.1 (2386708..2415474)

Chromosome 7 - NC_019865.2Genomic Context describing neighboring genes Neighboring gene ATPase H+ transporting accessory protein 1a Neighboring gene myelin transcription factor 1 Neighboring gene zinc finger protein PLAGL2-like Neighboring gene uncharacterized LOC105353676 Neighboring gene methyl CpG binding protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peroxisome proliferator activated receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in animal organ morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PR-DUB complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative Polycomb group protein ASXL1
Names
additional sex combs like 1, transcriptional regulator

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019865.2 Reference ASM223467v1 Primary Assembly

    Range
    30120247..30148870 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011473016.3 → XP_011471318.1  putative Polycomb group protein ASXL1

    Related
    ENSORLP00000024974.3, ENSORLT00000024975.3
    Conserved Domains (3) summary
    pfam05066
    Location:11 → 86
    HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain
    pfam13919
    Location:237 → 357
    ASXH; Asx homology domain
    pfam13922
    Location:1498 → 1532
    PHD_3; PHD domain of transcriptional enhancer, Asx
Nucleotide Protein
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