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lmod1b leiomodin 1b (smooth muscle) [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101167029, updated on 8-Mar-2024

Summary

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Gene symbol
lmod1b
Gene description
leiomodin 1b (smooth muscle)
See related
EnsemblRapid:ENSORLG00000005777
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
lmod1
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 5 NC_019863.2 (11436722..11440825)
102 previous assembly ASM31367v1 (GCF_000313675.1) 5 NC_019863.1 (9899197..9903151)

Chromosome 5 - NC_019863.2Genomic Context describing neighboring genes Neighboring gene importin 9 Neighboring gene shisa family member 4 Neighboring gene translocase of inner mitochondrial membrane 17 homolog A (yeast) Neighboring gene ras-related protein Rap-1A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tropomyosin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in myofibril assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pointed-end actin filament capping IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in myofibril IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in striated muscle thin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leiomodin-1
Names
leiomodin 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019863.2 Reference ASM223467v1 Primary Assembly

    Range
    11436722..11440825
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023954907.1 → XP_023810675.1  leiomodin-1

    UniProtKB/TrEMBL
    A0A3B3I1K1, H2LMI8
    Related
    ENSORLP00000007260.2, ENSORLT00000007261.3
    Conserved Domains (2) summary
    cl26161
    Location:379 → 473
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    cl26511
    Location:77 → 345
    Neuromodulin_N; Gap junction protein N-terminal region
Nucleotide Protein
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