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nudt21 nudix hydrolase 21 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101165463, updated on 11-Apr-2024

Summary

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Gene symbol
nudt21
Gene description
nudix hydrolase 21
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 3 NC_019861.2 (21695917..21699222)
102 previous assembly ASM31367v1 (GCF_000313675.1) 3 NC_019861.1 (20208731..20212037)

Chromosome 3 - NC_019861.2Genomic Context describing neighboring genes Neighboring gene transcriptional repressor CTCF Neighboring gene uncharacterized serine-rich protein C215.13 Neighboring gene 2-oxoglutarate and iron-dependent oxygenase domain containing 1 Neighboring gene tnfrsf1a-associated via death domain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cleavage and polyadenylation specificity factor subunit 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019861.2 Reference ASM223467v1 Primary Assembly

    Range
    21695917..21699222
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004067190.4 → XP_004067238.1  cleavage and polyadenylation specificity factor subunit 5

    UniProtKB/TrEMBL
    A0A3B3IC95, A0A3P9HAE4, A0A3P9KEL1, H2LY23
    Conserved Domains (1) summary
    pfam13869
    Location:37 → 224
    NUDIX_2; Nucleotide hydrolase
Nucleotide Protein
Heading Accession and Version

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