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srcap Snf2-related CREBBP activator protein [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101165011, updated on 8-Mar-2024

Summary

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Gene symbol
srcap
Gene description
Snf2-related CREBBP activator protein
See related
EnsemblRapid:ENSORLG00000012491
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See srcap in Genome Data Viewer
Location:
chromosome: 19
Exon count:
35
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 19 NC_019877.2 (19217759..19251769)
102 previous assembly ASM31367v1 (GCF_000313675.1) 19 NC_019877.1 (18790704..18822857)

Chromosome 19 - NC_019877.2Genomic Context describing neighboring genes Neighboring gene mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) Neighboring gene fibrosin Neighboring gene syntaxin 4 Neighboring gene uncharacterized LOC110017171 Neighboring gene rho GTPase-activating protein 44

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Swr1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
helicase SRCAP

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019877.2 Reference ASM223467v1 Primary Assembly

    Range
    19217759..19251769
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020711943.2 → XP_020567602.1  helicase SRCAP isoform X1

    UniProtKB/TrEMBL
    A0A3P9LJ66
    Conserved Domains (8) summary
    pfam00176
    Location:1440 → 1726
    SNF2_N; SNF2 family N-terminal domain
    pfam07529
    Location:1026 → 1093
    HSA
    cl00478
    Location:3483 → 3639
    LGT; Prolipoprotein diacylglyceryl transferase
    cl25496
    Location:3106 → 3452
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl25732
    Location:2540 → 2686
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26464
    Location:1820 → 2185
    Atrophin-1; Atrophin-1 family
    cl26465
    Location:2381 → 2535
    SNF2_N; SNF2 family N-terminal domain
    cl28033
    Location:2704 → 2887
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  2. XM_020711945.2 → XP_020567604.1  helicase SRCAP isoform X2

    UniProtKB/TrEMBL
    A0A3P9LJ66
    Conserved Domains (8) summary
    pfam00176
    Location:1439 → 1725
    SNF2_N; SNF2 family N-terminal domain
    pfam07529
    Location:1025 → 1092
    HSA
    cl00478
    Location:3482 → 3638
    LGT; Prolipoprotein diacylglyceryl transferase
    cl25496
    Location:3105 → 3451
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl25732
    Location:2539 → 2685
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26464
    Location:1819 → 2184
    Atrophin-1; Atrophin-1 family
    cl26465
    Location:2380 → 2534
    SNF2_N; SNF2 family N-terminal domain
    cl28033
    Location:2703 → 2886
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  3. XM_011488406.3 → XP_011486708.1  helicase SRCAP isoform X3

    See identical proteins and their annotated locations for XP_011486708.1

    UniProtKB/TrEMBL
    A0A3P9JQC8, H2MAS8
    Related
    ENSORLP00000064084.1, ENSORLT00000066624.1
    Conserved Domains (7) summary
    cd00046
    Location:1443 → 1582
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:1426 → 1712
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:2366 → 2480
    Helicase_C; Helicase conserved C-terminal domain
    pfam03546
    Location:3084 → 3616
    Treacle; Treacher Collins syndrome protein Treacle
    pfam07529
    Location:1012 → 1079
    HSA; HSA
    pfam13892
    Location:1034 → 1134
    DBINO; DNA-binding domain
    cl23750
    Location:2566 → 2674
    vATP-synt_E; ATP synthase (E/31 kDa) subunit

  4. XM_020711944.2 → XP_020567603.1  helicase SRCAP isoform X1

    UniProtKB/TrEMBL
    A0A3P9LJ66
    Related
    ENSORLP00000015638.3, ENSORLT00000015639.3
    Conserved Domains (8) summary
    pfam00176
    Location:1440 → 1726
    SNF2_N; SNF2 family N-terminal domain
    pfam07529
    Location:1026 → 1093
    HSA
    cl00478
    Location:3483 → 3639
    LGT; Prolipoprotein diacylglyceryl transferase
    cl25496
    Location:3106 → 3452
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl25732
    Location:2540 → 2686
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26464
    Location:1820 → 2185
    Atrophin-1; Atrophin-1 family
    cl26465
    Location:2381 → 2535
    SNF2_N; SNF2 family N-terminal domain
    cl28033
    Location:2704 → 2887
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
Nucleotide Protein
Heading Accession and Version

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