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shcbp1 SHC SH2-domain binding protein 1 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101164627, updated on 8-Mar-2024

Summary

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Gene symbol
shcbp1
Gene description
SHC SH2-domain binding protein 1
See related
EnsemblRapid:ENSORLG00000018293
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 3 NC_019861.2 (37267194..37277037)
102 previous assembly ASM31367v1 (GCF_000313675.1) Unplaced Scaffold NW_004095156.1 (27927..37867)

Chromosome 3 - NC_019861.2Genomic Context describing neighboring genes Neighboring gene aerolysin-like protein Neighboring gene tumor suppressing subtransferable candidate 4 Neighboring gene aerolysin-like protein Neighboring gene aerolysin-like protein Neighboring gene uncharacterized LOC111947184 Neighboring gene AP-2 complex subunit alpha-2 Neighboring gene SPG21 abhydrolase domain containing, maspardin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in fibroblast growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SHC SH2 domain-binding protein 1
Names
SHC binding and spindle associated 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019861.2 Reference ASM223467v1 Primary Assembly

    Range
    37267194..37277037
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004086075.4 → XP_004086123.1  SHC SH2 domain-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3P9L295, H2MVR0
    Related
    ENSORLP00000022909.2, ENSORLT00000022910.3
    Conserved Domains (2) summary
    pfam13229
    Location:473 → 574
    Beta_helix; Right handed beta helix region
    cl22974
    Location:579 → 653
    HpaP; Type III secretion protein (HpaP)

  2. XM_011494529.3 → XP_011492831.1  SHC SH2 domain-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3P9L295
    Conserved Domains (1) summary
    pfam13229
    Location:473 → 574
    Beta_helix; Right handed beta helix region
Nucleotide Protein
Heading Accession and Version

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