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amph amphiphysin [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101161998, updated on 8-Mar-2024

Summary

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Gene symbol
amph
Gene description
amphiphysin
See related
EnsemblRapid:ENSORLG00000008074
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 17
Exon count:
24
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 17 NC_019875.2 (13288784..13312000, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 17 NC_019875.1 (13437745..13466334, complement)

Chromosome 17 - NC_019875.2Genomic Context describing neighboring genes Neighboring gene homeobox protein engrailed-1-B Neighboring gene canopy FGF signaling regulator 1 Neighboring gene inhibin subunit beta Ab Neighboring gene M-phase specific PLK1 interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
amphiphysin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019875.2 Reference ASM223467v1 Primary Assembly

    Range
    13288784..13312000 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023965122.1 → XP_023820890.1  amphiphysin isoform X4

    UniProtKB/TrEMBL
    A0A3B3IDR4, A0A3P9HP41
    Related
    ENSORLP00000042220.1, ENSORLT00000039855.2
    Conserved Domains (3) summary
    cl12013
    Location:26 → 236
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    cl17036
    Location:647 → 717
    SH3; Src Homology 3 domain superfamily
    cl26247
    Location:373 → 605
    DNA_pol3_delta2; DNA polymerase III, delta subunit

  2. XM_023965121.1 → XP_023820889.1  amphiphysin isoform X3

    Conserved Domains (2) summary
    cl17036
    Location:793 → 863
    SH3; Src Homology 3 domain superfamily
    cl27511
    Location:321 → 560
    Na_Ca_ex; Sodium/calcium exchanger protein

  3. XM_023965120.1 → XP_023820888.1  amphiphysin isoform X2

    Conserved Domains (3) summary
    PRK11633
    Location:709 → 807
    PRK11633; cell division protein DedD; Provisional
    cl17036
    Location:873 → 943
    SH3; Src Homology 3 domain superfamily
    cl27511
    Location:321 → 560
    Na_Ca_ex; Sodium/calcium exchanger protein

  4. XM_023965119.1 → XP_023820887.1  amphiphysin isoform X1

    Conserved Domains (4) summary
    PRK11633
    Location:709 → 777
    PRK11633; cell division protein DedD; Provisional
    cl17036
    Location:888 → 958
    SH3; Src Homology 3 domain superfamily
    cl26247
    Location:708 → 846
    DNA_pol3_delta2; DNA polymerase III, delta subunit
    cl27511
    Location:321 → 560
    Na_Ca_ex; Sodium/calcium exchanger protein
Nucleotide Protein
Heading Accession and Version

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