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smad6b SMAD family member 6b [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101161801, updated on 8-Mar-2024

Summary

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Gene symbol
smad6b
Gene description
SMAD family member 6b
See related
EnsemblRapid:ENSORLG00000006825
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
smad6
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 6 NC_019864.2 (16397451..16420108, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 6 NC_019864.1 (11152259..11178528, complement)

Chromosome 6 - NC_019864.2Genomic Context describing neighboring genes Neighboring gene IQ motif containing H Neighboring gene alpha and gamma adaptin binding protein Neighboring gene SMAD family member 3b Neighboring gene small nucleolar RNA SNORD16 Neighboring gene lactase-like b Neighboring gene zwilch kinetochore protein Neighboring gene ribosomal protein L4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables I-SMAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription regulator inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in SMAD protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transforming growth factor beta receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of heteromeric SMAD protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mothers against decapentaplegic homolog 6
Names
SMAD family member 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019864.2 Reference ASM223467v1 Primary Assembly

    Range
    16397451..16420108 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004069613.4 → XP_004069661.1  mothers against decapentaplegic homolog 6

    UniProtKB/TrEMBL
    A0A3P9JTD6, A0A3P9LYD0, H2LR75
    Related
    ENSORLP00000078355.1, ENSORLT00000084994.1
    Conserved Domains (2) summary
    cd10493
    Location:153 → 264
    MH1_SMAD_6; N-terminal Mad Homology 1 (MH1) domain in SMAD6
    cd10499
    Location:313 → 486
    MH2_SMAD_6; C-terminal Mad Homology 2 (MH2) domain in SMAD6
Nucleotide Protein
Heading Accession and Version

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