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lrpprc leucine-rich pentatricopeptide repeat containing [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101161501, updated on 8-Mar-2024

Summary

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Gene symbol
lrpprc
Gene description
leucine-rich pentatricopeptide repeat containing
See related
EnsemblRapid:ENSORLG00000004605
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 15
Exon count:
38
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 15 NC_019873.2 (16403152..16456378)
102 previous assembly ASM31367v1 (GCF_000313675.1) 15 NC_019873.1 (15584276..15637309)

Chromosome 15 - NC_019873.2Genomic Context describing neighboring genes Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent, 1Ba Neighboring gene zinc finger, HIT-type containing 2 Neighboring gene ATP-binding cassette, sub-family G (WHITE), member 8 Neighboring gene ATP-binding cassette, sub-family G (WHITE), member 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich PPR motif-containing protein, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019873.2 Reference ASM223467v1 Primary Assembly

    Range
    16403152..16456378
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011484310.3 → XP_011482612.1  leucine-rich PPR motif-containing protein, mitochondrial

    UniProtKB/TrEMBL
    H2LIH1
    Related
    ENSORLP00000074082.1, ENSORLT00000081937.1
    Conserved Domains (5) summary
    TIGR00756
    Location:732 → 760
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:207 → 234
    PPR; PPR repeat [structural motif]
    pfam08074
    Location:684 → 794
    CHDCT2; CHDCT2 (NUC038) domain
    pfam13041
    Location:203 → 252
    PPR_2; PPR repeat family
    cl03252
    Location:200 → 232
    PPR; PPR repeat
Nucleotide Protein
Heading Accession and Version

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