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nup153 nucleoporin 153 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101161421, updated on 8-Mar-2024

Summary

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Gene symbol
nup153
Gene description
nucleoporin 153
See related
EnsemblRapid:ENSORLG00000012674
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See nup153 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
22
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 11 NC_019869.2 (23086840..23103614, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 11 NC_019869.1 (22750129..22766807, complement)

Chromosome 11 - NC_019869.2Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase 15 Neighboring gene glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1a (glutamate binding) Neighboring gene phosphatidylserine synthase 1b Neighboring gene mitochondrial transcription termination factor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear localization sequence binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear pore complex protein Nup153

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019869.2 Reference ASM223467v1 Primary Assembly

    Range
    23086840..23103614 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011481268.3 → XP_011479570.2  nuclear pore complex protein Nup153 isoform X1

    UniProtKB/TrEMBL
    A0A3P9K9V7, H2MBF7
    Related
    ENSORLP00000015879.2, ENSORLT00000015880.3
    Conserved Domains (4) summary
    sd00025
    Location:683 → 702
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:876 → 905
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam08604
    Location:122 → 633
    Nup153; Nucleoporin Nup153-like
    cl26464
    Location:1122 → 1319
    Atrophin-1; Atrophin-1 family

  2. XM_011481269.3 → XP_011479571.3  nuclear pore complex protein Nup153 isoform X2

    UniProtKB/TrEMBL
    A0A3P9K9V7
    Conserved Domains (4) summary
    sd00025
    Location:665 → 684
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:858 → 887
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam08604
    Location:104 → 615
    Nup153; Nucleoporin Nup153-like
    cl26464
    Location:1104 → 1301
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
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