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psmd12 proteasome 26S subunit, non-ATPase 12 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101161219, updated on 8-Mar-2024

Summary

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Gene symbol
psmd12
Gene description
proteasome 26S subunit, non-ATPase 12
See related
EnsemblRapid:ENSORLG00000013934
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 1 NC_019859.2 (31305580..31325844, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 1 NC_019859.1 (31010401..31033276, complement)

Chromosome 1 - NC_019859.2Genomic Context describing neighboring genes Neighboring gene calcium channel, voltage-dependent, gamma subunit 1a Neighboring gene helicase with zinc finger Neighboring gene phosphatidylinositol transfer protein cytoplasmic 1 Neighboring gene GPI-linked NAD(P)(+)--arginine ADP-ribosyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear proteasome complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome regulatory particle, lid subcomplex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
26S proteasome non-ATPase regulatory subunit 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019859.2 Reference ASM223467v1 Primary Assembly

    Range
    31305580..31325844 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023960450.1 → XP_023816218.1  26S proteasome non-ATPase regulatory subunit 12

    UniProtKB/TrEMBL
    A0A3B3HKL0, A0A3P9JTW7, A0A3P9LHH5
    Related
    ENSORLP00000055406.1, ENSORLT00000094494.1
    Conserved Domains (1) summary
    COG5071
    Location:15 → 457
    RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version

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