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rbfox3a RNA binding fox-1 homolog 3a [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101159826, updated on 8-Mar-2024

Summary

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Gene symbol
rbfox3a
Gene description
RNA binding fox-1 homolog 3a
See related
EnsemblRapid:ENSORLG00000000905
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
rbfox3
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 8
Exon count:
18
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 8 NC_019866.2 (1289269..1582671, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 8 NC_019866.1 (837904..1218585, complement)

Chromosome 8 - NC_019866.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111947727 Neighboring gene glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca Neighboring gene uncharacterized LOC105354499 Neighboring gene uncharacterized LOC105354494 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase family member 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA binding protein fox-1 homolog 3
Names
RNA binding fox-1 homolog 3
RNA binding protein, fox-1 homolog 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019866.2 Reference ASM223467v1 Primary Assembly

    Range
    1289269..1582671 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023957269.1 → XP_023813037.1  RNA binding protein fox-1 homolog 3 isoform X4

    UniProtKB/TrEMBL
    A0A3B3IIK5
    Related
    ENSORLP00000068393.1, ENSORLT00000070176.1
    Conserved Domains (4) summary
    cd12407
    Location:265 → 340
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:374 → 462
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    pfam12868
    Location:134 → 189
    DUF3824; Domain of unknwon function (DUF3824)
    cl26464
    Location:99 → 227
    Atrophin-1; Atrophin-1 family

  2. XM_023957268.1 → XP_023813036.1  RNA binding protein fox-1 homolog 3 isoform X3

    UniProtKB/TrEMBL
    A0A3B3IIK5
    Conserved Domains (4) summary
    cd12407
    Location:265 → 340
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:374 → 462
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    pfam12868
    Location:134 → 189
    DUF3824; Domain of unknwon function (DUF3824)
    cl26464
    Location:99 → 227
    Atrophin-1; Atrophin-1 family

  3. XM_023957267.1 → XP_023813035.1  RNA binding protein fox-1 homolog 3 isoform X2

    UniProtKB/TrEMBL
    A0A3B3IIK5
    Conserved Domains (4) summary
    cd12407
    Location:265 → 340
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:374 → 462
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    pfam12868
    Location:134 → 189
    DUF3824; Domain of unknwon function (DUF3824)
    cl26464
    Location:99 → 227
    Atrophin-1; Atrophin-1 family

  4. XM_023957273.1 → XP_023813041.1  RNA binding protein fox-1 homolog 3 isoform X7

    UniProtKB/TrEMBL
    A0A3P9J4G0
    Conserved Domains (3) summary
    cd12407
    Location:172 → 247
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:281 → 369
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    cl25887
    Location:39 → 243
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

  5. XM_023957272.1 → XP_023813040.1  RNA binding protein fox-1 homolog 3 isoform X7

    UniProtKB/TrEMBL
    A0A3P9J4G0
    Related
    ENSORLP00000038530.2, ENSORLT00000045739.2
    Conserved Domains (3) summary
    cd12407
    Location:172 → 247
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:281 → 369
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    cl25887
    Location:39 → 243
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

  6. XM_023957274.1 → XP_023813042.1  RNA binding protein fox-1 homolog 3 isoform X8

    UniProtKB/TrEMBL
    A0A3P9HLN0
    Conserved Domains (3) summary
    cd12407
    Location:155 → 230
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:264 → 352
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    cl25887
    Location:39 → 226
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

  7. XM_023957275.1 → XP_023813043.1  RNA binding protein fox-1 homolog 3 isoform X9

    UniProtKB/TrEMBL
    A0A3P9J4G0
    Related
    ENSORLP00000052827.1, ENSORLT00000061511.1
    Conserved Domains (3) summary
    cd12407
    Location:134 → 209
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:243 → 331
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    pfam12868
    Location:11 → 58
    DUF3824; Domain of unknwon function (DUF3824)

  8. XM_023957276.1 → XP_023813044.1  RNA binding protein fox-1 homolog 3 isoform X10

    UniProtKB/TrEMBL
    A0A3P9L8F9
    Related
    ENSORLP00000082805.1, ENSORLT00000081540.1
    Conserved Domains (3) summary
    cd12407
    Location:117 → 192
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:226 → 314
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    cl25887
    Location:8 → 188
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

  9. XM_023957271.1 → XP_023813039.1  RNA binding protein fox-1 homolog 3 isoform X6

    UniProtKB/TrEMBL
    A0A3B3IIK5
    Related
    ENSORLP00000085139.1, ENSORLT00000100065.1
    Conserved Domains (4) summary
    pfam12414
    Location:343 → 431
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    pfam12868
    Location:134 → 189
    DUF3824; Domain of unknwon function (DUF3824)
    cl17169
    Location:265 → 304
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl26464
    Location:99 → 227
    Atrophin-1; Atrophin-1 family

  10. XM_023957270.1 → XP_023813038.1  RNA binding protein fox-1 homolog 3 isoform X5

    UniProtKB/TrEMBL
    A0A3B3IIK5
    Related
    ENSORLP00000043915.2, ENSORLT00000027408.2
    Conserved Domains (3) summary
    cd12407
    Location:248 → 323
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:357 → 445
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    cl25887
    Location:22 → 338
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

  11. XM_023957266.1 → XP_023813034.1  RNA binding protein fox-1 homolog 3 isoform X1

    UniProtKB/TrEMBL
    A0A3B3IIK5, H2L5M6
    Related
    ENSORLP00000001106.2, ENSORLT00000001107.3
    Conserved Domains (4) summary
    cd12407
    Location:265 → 340
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:374 → 462
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    pfam12868
    Location:134 → 189
    DUF3824; Domain of unknwon function (DUF3824)
    cl26464
    Location:99 → 227
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
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