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recql5 RecQ helicase-like 5 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101159106, updated on 8-Mar-2024

Summary

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Gene symbol
recql5
Gene description
RecQ helicase-like 5
See related
EnsemblRapid:ENSORLG00000012294
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 8
Exon count:
19
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 8 NC_019866.2 (15341246..15353366)
102 previous assembly ASM31367v1 (GCF_000313675.1) 8 NC_019866.1 (15659001..15671344)

Chromosome 8 - NC_019866.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101160981 Neighboring gene butyrophilin subfamily 3 member A1 Neighboring gene uncharacterized LOC105354589 Neighboring gene cerebellar degeneration-related protein 2-like Neighboring gene Rho GDP dissociation inhibitor (GDI) alpha Neighboring gene Aly/REF export factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5' DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables four-way junction helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA unwinding involved in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent DNA helicase Q5
Names
RecQ like helicase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019866.2 Reference ASM223467v1 Primary Assembly

    Range
    15341246..15353366
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011478351.3 → XP_011476653.1  ATP-dependent DNA helicase Q5

    See identical proteins and their annotated locations for XP_011476653.1

    UniProtKB/TrEMBL
    A0A3P9M6S4, H2MA39
    Related
    ENSORLP00000015387.2, ENSORLT00000015388.3
    Conserved Domains (5) summary
    smart00487
    Location:12 → 217
    DEXDc; DEAD-like helicases superfamily
    cd00079
    Location:233 → 349
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    pfam00270
    Location:19 → 189
    DEAD; DEAD/DEAH box helicase
    pfam06959
    Location:643 → 754
    RecQ5; RecQ helicase protein-like 5 (RecQ5)
    pfam16124
    Location:354 → 422
    RecQ_Zn_bind; RecQ zinc-binding

  2. XM_011478352.3 → XP_011476654.1  ATP-dependent DNA helicase Q5

    See identical proteins and their annotated locations for XP_011476654.1

    UniProtKB/TrEMBL
    A0A3P9M6S4, H2MA39
    Conserved Domains (5) summary
    smart00487
    Location:12 → 217
    DEXDc; DEAD-like helicases superfamily
    cd00079
    Location:233 → 349
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    pfam00270
    Location:19 → 189
    DEAD; DEAD/DEAH box helicase
    pfam06959
    Location:643 → 754
    RecQ5; RecQ helicase protein-like 5 (RecQ5)
    pfam16124
    Location:354 → 422
    RecQ_Zn_bind; RecQ zinc-binding
Nucleotide Protein
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