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rab7a RAB7A, member RAS oncogene family [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101157360, updated on 9-Nov-2023

Summary

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Gene symbol
rab7a
Gene description
RAB7A, member RAS oncogene family
See related
EnsemblRapid:ENSORLG00000001351
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 5 NC_019863.2 (3651173..3660948, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 5 NC_019863.1 (1793377..1802151, complement)

Chromosome 5 - NC_019863.2Genomic Context describing neighboring genes Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4b Neighboring gene actin related protein 2/3 complex, subunit 4 Neighboring gene fibroleukin-like Neighboring gene GATA binding protein 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phagosome-lysosome fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rab-7a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019863.2 Reference ASM223467v1 Primary Assembly

    Range
    3651173..3660948 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004068500.4 → XP_004068548.1  ras-related protein Rab-7a

    UniProtKB/TrEMBL
    A0A3P9HE46, A0A3P9K9P2, H2MQV0
    Related
    ENSORLP00000021124.2, ENSORLT00000021125.3
    Conserved Domains (2) summary
    smart00175
    Location:9 → 176
    RAB; Rab subfamily of small GTPases
    cd01862
    Location:9 → 179
    Rab7; Rab GTPase family 7 (Rab7)
Nucleotide Protein
Heading Accession and Version

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