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smdt1 single-pass membrane protein with aspartate rich tail 1 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101156580, updated on 9-Nov-2023

Summary

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Gene symbol
smdt1
Gene description
single-pass membrane protein with aspartate rich tail 1
See related
EnsemblRapid:ENSORLG00000014736
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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See smdt1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 8 NC_019866.2 (20047395..20048331, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 8 NC_019866.1 (20121971..20122905, complement)

Chromosome 8 - NC_019866.2Genomic Context describing neighboring genes Neighboring gene TRIO and F-actin binding protein b Neighboring gene NADH:ubiquinone oxidoreductase subunit A6 Neighboring gene family with sequence similarity 234 member B Neighboring gene U12 minor spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in calcium import into the mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of uniplex complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
essential MCU regulator, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019866.2 Reference ASM223467v1 Primary Assembly

    Range
    20047395..20048331 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004071803.4 → XP_004071851.1  essential MCU regulator, mitochondrial

    UniProtKB/TrEMBL
    A0A3P9IBG9, H2MII7
    Related
    ENSORLP00000018468.1, ENSORLT00000018469.3
    Conserved Domains (1) summary
    pfam10161
    Location:22 → 88
    DDDD; Putative mitochondrial precursor protein
Nucleotide Protein
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