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asic1b acid-sensing (proton-gated) ion channel 1b [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101155423, updated on 8-Mar-2024

Summary

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Gene symbol
asic1b
Gene description
acid-sensing (proton-gated) ion channel 1b
See related
EnsemblRapid:ENSORLG00000006894
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
asic1
Orthologs
human zebrafish all
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Genomic context

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See asic1b in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 5 NC_019863.2 (13912893..14065442, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 5 NC_019863.1 (12782324..12938646, complement)

Chromosome 5 - NC_019863.2Genomic Context describing neighboring genes Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 Neighboring gene glycerol-3-phosphate dehydrogenase 1 Neighboring gene elastase-1 Neighboring gene elastase-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acid-sensing ion channel 1
Names
acid sensing ion channel subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019863.2 Reference ASM223467v1 Primary Assembly

    Range
    13912893..14065442 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004068816.4 → XP_004068864.1  acid-sensing ion channel 1 isoform X3

    UniProtKB/TrEMBL
    A0A3B3IA66, A0A3P9J4A2
    Related
    ENSORLP00000041027.1, ENSORLT00000031246.2
    Conserved Domains (1) summary
    cl02990
    Location:21 → 513
    ASC; Amiloride-sensitive sodium channel

  2. XM_023954959.1 → XP_023810727.1  acid-sensing ion channel 1 isoform X1

    UniProtKB/TrEMBL
    A0A3B3HDY4, A0A3P9KVR1
    Related
    ENSORLP00000030119.1, ENSORLT00000031708.2
    Conserved Domains (1) summary
    cl02990
    Location:64 → 547
    ASC; Amiloride-sensitive sodium channel

  3. XM_011474989.3 → XP_011473291.1  acid-sensing ion channel 1 isoform X2

    UniProtKB/TrEMBL
    A0A3P9M8Y6, H2LRG2
    Related
    ENSORLP00000008661.2, ENSORLT00000008662.3
    Conserved Domains (1) summary
    cl02990
    Location:13 → 530
    ASC; Amiloride-sensitive sodium channel
Nucleotide Protein
Heading Accession and Version

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