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pgam5 PGAM family member 5, serine/threonine protein phosphatase, mitochondrial [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101155203, updated on 8-Mar-2024

Summary

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Gene symbol
pgam5
Gene description
PGAM family member 5, serine/threonine protein phosphatase, mitochondrial
See related
EnsemblRapid:ENSORLG00000015061
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 9 NC_019867.2 (23221327..23225141, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 9 NC_019867.1 (23003110..23008126, complement)

Chromosome 9 - NC_019867.2Genomic Context describing neighboring genes Neighboring gene golgin A3 Neighboring gene ankyrin repeat and LEM domain containing 2 Neighboring gene zinc finger DHHC-type palmitoyltransferase 8b Neighboring gene small nucleolar RNA SNORA77 Neighboring gene RAN binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of mitochondrial fission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein phosphatase PGAM5, mitochondrial
Names
PGAM family member 5, mitochondrial serine/threonine protein phosphatase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019867.2 Reference ASM223467v1 Primary Assembly

    Range
    23221327..23225141 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011479518.3 → XP_011477820.1  serine/threonine-protein phosphatase PGAM5, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A3P9MR51
    Related
    ENSORLP00000049068.1, ENSORLT00000101767.1
    Conserved Domains (1) summary
    cd07067
    Location:107 → 279
    HP_PGM_like; Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction

  2. XM_004072745.4 → XP_004072793.1  serine/threonine-protein phosphatase PGAM5, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A3P9MR51, H2MJM7
    Related
    ENSORLP00000087006.1, ENSORLT00000059344.1
    Conserved Domains (1) summary
    cd07067
    Location:107 → 280
    HP_PGM_like; Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction

RNA

  1. XR_002873881.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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