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aplp1 amyloid beta (A4) precursor-like protein 1 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101154976, updated on 8-Mar-2024

Summary

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Gene symbol
aplp1
Gene description
amyloid beta (A4) precursor-like protein 1
See related
EnsemblRapid:ENSORLG00000006555
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 16
Exon count:
17
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 16 NC_019874.2 (15250371..15285493, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 16 NC_019874.1 (11972906..11981997, complement)

Chromosome 16 - NC_019874.2Genomic Context describing neighboring genes Neighboring gene G protein-activated inward rectifier potassium channel 3-like Neighboring gene zinc finger and BTB domain containing 32 Neighboring gene ST14 transmembrane serine protease matriptase Neighboring gene kirre like nephrin family adhesion molecule 3, like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-2A adrenergic receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alpha-2B adrenergic receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alpha-2C adrenergic receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heparin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transition metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
amyloid-like protein 1
Names
amyloid beta precursor like protein 1
amyloid-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019874.2 Reference ASM223467v1 Primary Assembly

    Range
    15250371..15285493 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023964217.1 → XP_023819985.1  amyloid-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3P9H2I4
    Conserved Domains (3) summary
    pfam10515
    Location:651 → 702
    APP_amyloid; beta-amyloid precursor protein C-terminus
    pfam12925
    Location:325 → 506
    APP_E2; E2 domain of amyloid precursor protein
    cl26273
    Location:37 → 189
    APP_N; Amyloid A4 N-terminal heparin-binding

  2. XM_020710093.2 → XP_020565752.2  amyloid-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3P9H2I4, H2LQ91
    Related
    ENSORLP00000076883.1, ENSORLT00000082606.1
    Conserved Domains (3) summary
    pfam10515
    Location:651 → 701
    APP_amyloid; beta-amyloid precursor protein C-terminus
    pfam12925
    Location:325 → 506
    APP_E2; E2 domain of amyloid precursor protein
    cl26273
    Location:37 → 189
    APP_N; Amyloid A4 N-terminal heparin-binding
Nucleotide Protein
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