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SMOC1 SPARC related modular calcium binding 1 [ Gorilla gorilla gorilla (western lowland gorilla) ]

Gene ID: 101148639, updated on 3-Apr-2024

Summary

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Gene symbol
SMOC1
Gene description
SPARC related modular calcium binding 1
See related
Ensembl:ENSGGOG00000008202
Gene type
protein coding
RefSeq status
MODEL
Organism
Gorilla gorilla gorilla (sub-species: gorilla)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Gorilla
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mGorGor1-v2.0_pri (GCF_029281585.2) 15 NC_073239.2 (86782868..86944255)
RS_2023_04 previous assembly NHGRI_mGorGor1-v1.1-0.2.freeze_pri (GCF_029281585.1) 14 NC_073238.1 (78543944..78705133)

Chromosome 15 - NC_073239.2Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA11 Neighboring gene solute carrier family 10 member 1 Neighboring gene solute carrier family 8 member A3 Neighboring gene uncharacterized LOC109023276

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables extracellular matrix binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heparin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SPARC-related modular calcium-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029281585.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

Genomic

  1. NC_073239.2 Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

    Range
    86782868..86944255
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019010111.4 → XP_018865656.1  SPARC-related modular calcium-binding protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A2I2YNC4, G3S8N9
    Related
    ENSGGOP00000024452.1
    Conserved Domains (4) summary
    cd00104
    Location:47 → 87
    KAZAL_FS; Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the ...
    cd16240
    Location:315 → 429
    EFh_SPARC_SMOC1; EF-hand, extracellular calcium-binding (EC) motif, found in secreted modular calcium-binding protein 1 (SMOC-1)
    pfam00086
    Location:95 → 158
    Thyroglobulin_1; Thyroglobulin type-1 repeat
    pfam16597
    Location:159 → 219
    Thyroglob_assoc; Thyroglobulin_1 repeat associated disordered domain

  2. XM_004055368.5 → XP_004055416.1  SPARC-related modular calcium-binding protein 1 isoform X6

    UniProtKB/TrEMBL
    G3QYS6
    Conserved Domains (4) summary
    cd00104
    Location:47 → 87
    KAZAL_FS; Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the ...
    cd16240
    Location:315 → 429
    EFh_SPARC_SMOC1; EF-hand, extracellular calcium-binding (EC) motif, found in secreted modular calcium-binding protein 1 (SMOC-1)
    pfam00086
    Location:95 → 158
    Thyroglobulin_1; Thyroglobulin type-1 repeat
    pfam16597
    Location:159 → 219
    Thyroglob_assoc; Thyroglobulin_1 repeat associated disordered domain

  3. XM_055362206.2 → XP_055218181.1  SPARC-related modular calcium-binding protein 1 isoform X1

  4. XM_019010109.4 → XP_018865654.1  SPARC-related modular calcium-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    G3QYS6
    Conserved Domains (4) summary
    cd00104
    Location:47 → 87
    KAZAL_FS; Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the ...
    cd16240
    Location:315 → 429
    EFh_SPARC_SMOC1; EF-hand, extracellular calcium-binding (EC) motif, found in secreted modular calcium-binding protein 1 (SMOC-1)
    pfam00086
    Location:95 → 158
    Thyroglobulin_1; Thyroglobulin type-1 repeat
    pfam16597
    Location:159 → 219
    Thyroglob_assoc; Thyroglobulin_1 repeat associated disordered domain

  5. XM_055362207.2 → XP_055218182.1  SPARC-related modular calcium-binding protein 1 isoform X2

  6. XM_055362208.2 → XP_055218183.1  SPARC-related modular calcium-binding protein 1 isoform X4

Nucleotide Protein
Heading Accession and Version

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