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SYNPO2 synaptopodin 2 [ Gorilla gorilla gorilla (western lowland gorilla) ]

Gene ID: 101146965, updated on 11-Mar-2024

Summary

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Gene symbol
SYNPO2
Gene description
synaptopodin 2
See related
Ensembl:ENSGGOG00000012942
Gene type
protein coding
RefSeq status
MODEL
Organism
Gorilla gorilla gorilla (sub-species: gorilla)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Gorilla
Orthologs
human mouse all
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Genomic context

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See SYNPO2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mGorGor1-v2.0_pri (GCF_029281585.2) 3 NC_073227.2 (139053581..139225309)
RS_2023_04 previous assembly NHGRI_mGorGor1-v1.1-0.2.freeze_pri (GCF_029281585.1) 4 NC_073228.1 (131837965..132009671)

Chromosome 3 - NC_073227.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129533234 Neighboring gene SEC24 homolog D, COPII coat complex component Neighboring gene uncharacterized LOC134758356 Neighboring gene myozenin 2 Neighboring gene ubiquitin specific peptidase 53

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptopodin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029281585.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

Genomic

  1. NC_073227.2 Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

    Range
    139053581..139225309
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019025663.3 → XP_018881208.1  synaptopodin-2 isoform X2

    UniProtKB/TrEMBL
    A0A2I2Z1U3
    Related
    ENSGGOP00000040955.1
    Conserved Domains (1) summary
    cd00992
    Location:7 → 85
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_004040320.5 → XP_004040368.3  synaptopodin-2 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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