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SMYD1 SET and MYND domain containing 1 [ Gorilla gorilla gorilla (western lowland gorilla) ]

Gene ID: 101146341, updated on 3-Apr-2024

Summary

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Gene symbol
SMYD1
Gene description
SET and MYND domain containing 1
See related
Ensembl:ENSGGOG00000009513
Gene type
protein coding
RefSeq status
MODEL
Organism
Gorilla gorilla gorilla (sub-species: gorilla)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Gorilla
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mGorGor1-v2.0_pri (GCF_029281585.2) 12 NC_073236.2 (52629423..52674639, complement)
RS_2023_04 previous assembly NHGRI_mGorGor1-v1.1-0.2.freeze_pri (GCF_029281585.1) 2A NC_073225.1 (94063248..94108498)

Chromosome 12 - NC_073236.2Genomic Context describing neighboring genes Neighboring gene threonine synthase like 2 Neighboring gene fatty acid binding protein 1 Neighboring gene lysine rich coiled-coil 1 Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K4 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase SMYD1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029281585.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

Genomic

  1. NC_073236.2 Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

    Range
    52629423..52674639 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031008213.3 → XP_030864073.1  histone-lysine N-methyltransferase SMYD1 isoform X1

    UniProtKB/TrEMBL
    G3S9N4
    Conserved Domains (2) summary
    pfam01753
    Location:52 → 90
    zf-MYND; MYND finger
    cd10526
    Location:7 → 281
    SET_SMYD1; SET domain (including post-SET domain) found in SET and MYND domain-containing protein 1 (SMYD1) and similar proteins

  2. XM_055378224.2 → XP_055234199.1  histone-lysine N-methyltransferase SMYD1 isoform X2

  3. XM_055378225.2 → XP_055234200.1  histone-lysine N-methyltransferase SMYD1 isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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