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HP1BP3 heterochromatin protein 1 binding protein 3 [ Ovis aries (sheep) ]

Gene ID: 101105636, updated on 3-Apr-2024

Summary

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Gene symbol
HP1BP3
Gene description
heterochromatin protein 1 binding protein 3
See related
EnsemblRapid:ENSOARG00020022609
Gene type
protein coding
RefSeq status
MODEL
Organism
Ovis aries
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) 2 NC_056055.1 (245587451..245624325)

Chromosome 2 - NC_056055.1Genomic Context describing neighboring genes Neighboring gene endothelin converting enzyme 1 Neighboring gene eukaryotic translation initiation factor 4 gamma 3 Neighboring gene small ubiquitin-related modifier 2-like Neighboring gene uncharacterized LOC121818786 Neighboring gene SH2 domain containing 5 Neighboring gene kinesin family member 17

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056055.1 Chromosome 2 Reference ARS-UI_Ramb_v3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterochromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heterochromatin protein 1-binding protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UI_Ramb_v3.0 Primary Assembly

Genomic

  1. NC_056055.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Range
    245587451..245624325
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042244659.1 → XP_042100593.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P3YGH0, A0A836AC58, W5PG93
    Conserved Domains (3) summary
    smart00526
    Location:253 → 319
    H15; Domain in histone families 1 and 5
    cd00073
    Location:155 → 245
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:346 → 411
    Linker_histone; linker histone H1 and H5 family

  2. XM_060410739.1 → XP_060266722.1  heterochromatin protein 1-binding protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A6P3TNI7

  3. XM_015093721.3 → XP_014949207.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P3YGH0, A0A836AC58, W5PG93
    Conserved Domains (3) summary
    smart00526
    Location:253 → 319
    H15; Domain in histone families 1 and 5
    cd00073
    Location:155 → 245
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:346 → 411
    Linker_histone; linker histone H1 and H5 family

  4. XM_060410734.1 → XP_060266717.1  heterochromatin protein 1-binding protein 3 isoform X2

  5. XM_060410738.1 → XP_060266721.1  heterochromatin protein 1-binding protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A6P3TNI7
    Related
    ENSOARP00020063469.1, ENSOART00020041858.1

  6. XM_042244666.2 → XP_042100600.1  heterochromatin protein 1-binding protein 3 isoform X7

    Conserved Domains (2) summary
    smart00526
    Location:253 → 319
    H15; Domain in histone families 1 and 5
    cd00073
    Location:155 → 245
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...

  7. XM_015093722.3 → XP_014949208.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P3YGH0, A0A836AC58, W5PG93
    Related
    ENSOARP00020028987.1, ENSOART00020035087.2
    Conserved Domains (3) summary
    smart00526
    Location:253 → 319
    H15; Domain in histone families 1 and 5
    cd00073
    Location:155 → 245
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:346 → 411
    Linker_histone; linker histone H1 and H5 family

  8. XM_015093724.3 → XP_014949210.1  heterochromatin protein 1-binding protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A6P3TNI7, A0A836AC58
    Conserved Domains (3) summary
    smart00526
    Location:215 → 281
    H15; Domain in histone families 1 and 5
    cd00073
    Location:117 → 207
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:308 → 373
    Linker_histone; linker histone H1 and H5 family

  9. XM_015093726.3 → XP_014949212.1  heterochromatin protein 1-binding protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A6P3TNI7, A0A836AC58
    Conserved Domains (3) summary
    smart00526
    Location:215 → 281
    H15; Domain in histone families 1 and 5
    cd00073
    Location:117 → 207
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:308 → 373
    Linker_histone; linker histone H1 and H5 family

  10. XM_060410742.1 → XP_060266725.1  heterochromatin protein 1-binding protein 3 isoform X5

  11. XM_060410741.1 → XP_060266724.1  heterochromatin protein 1-binding protein 3 isoform X4

  12. XM_060410731.1 → XP_060266714.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P3YGH0, W5PG93

  13. XM_060410736.1 → XP_060266719.1  heterochromatin protein 1-binding protein 3 isoform X2

  14. XM_060410730.1 → XP_060266713.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P3YGH0, W5PG93

  15. XM_060410737.1 → XP_060266720.1  heterochromatin protein 1-binding protein 3 isoform X2

    Related
    ENSOARP00020039556.1, ENSOART00020043240.1

  16. XM_060410728.1 → XP_060266711.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P3YGH0, W5PG93

  17. XM_060410735.1 → XP_060266718.1  heterochromatin protein 1-binding protein 3 isoform X2

  18. XM_060410740.1 → XP_060266723.1  heterochromatin protein 1-binding protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A6P3TNI7

  19. XM_015093723.4 → XP_014949209.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P3YGH0, A0A836AC58, W5PG93
    Conserved Domains (3) summary
    smart00526
    Location:253 → 319
    H15; Domain in histone families 1 and 5
    cd00073
    Location:155 → 245
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:346 → 411
    Linker_histone; linker histone H1 and H5 family

  20. XM_042244662.2 → XP_042100596.1  heterochromatin protein 1-binding protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A836AC58
    Conserved Domains (3) summary
    smart00526
    Location:252 → 318
    H15; Domain in histone families 1 and 5
    cd00073
    Location:154 → 244
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:345 → 410
    Linker_histone; linker histone H1 and H5 family

  21. XM_042244664.2 → XP_042100598.1  heterochromatin protein 1-binding protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A6P3TNI7, A0A836AC58
    Conserved Domains (3) summary
    smart00526
    Location:215 → 281
    H15; Domain in histone families 1 and 5
    cd00073
    Location:117 → 207
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:308 → 373
    Linker_histone; linker histone H1 and H5 family

  22. XM_042244663.2 → XP_042100597.1  heterochromatin protein 1-binding protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A6P3TNI7, A0A836AC58
    Conserved Domains (3) summary
    smart00526
    Location:215 → 281
    H15; Domain in histone families 1 and 5
    cd00073
    Location:117 → 207
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:308 → 373
    Linker_histone; linker histone H1 and H5 family

  23. XM_060410743.1 → XP_060266726.1  heterochromatin protein 1-binding protein 3 isoform X6

  24. XM_042244660.1 → XP_042100594.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P3YGH0, A0A836AC58, W5PG93
    Conserved Domains (3) summary
    smart00526
    Location:253 → 319
    H15; Domain in histone families 1 and 5
    cd00073
    Location:155 → 245
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:346 → 411
    Linker_histone; linker histone H1 and H5 family

  25. XM_060410732.1 → XP_060266715.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P3YGH0, W5PG93

  26. XM_060410729.1 → XP_060266712.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P3YGH0, W5PG93

  27. XM_060410733.1 → XP_060266716.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P3YGH0, W5PG93

  28. XM_012153155.5 → XP_012008545.1  heterochromatin protein 1-binding protein 3 isoform X3

    See identical proteins and their annotated locations for XP_012008545.1

    UniProtKB/TrEMBL
    A0A6P3TNI7, A0A836AC58
    Conserved Domains (3) summary
    smart00526
    Location:215 → 281
    H15; Domain in histone families 1 and 5
    cd00073
    Location:117 → 207
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:308 → 373
    Linker_histone; linker histone H1 and H5 family

  29. XM_042244665.2 → XP_042100599.1  heterochromatin protein 1-binding protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A6P3TNI7, A0A836AC58
    Conserved Domains (3) summary
    smart00526
    Location:215 → 281
    H15; Domain in histone families 1 and 5
    cd00073
    Location:117 → 207
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:308 → 373
    Linker_histone; linker histone H1 and H5 family
Nucleotide Protein Strain
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