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SHROOM3 shroom family member 3 [ Felis catus (domestic cat) ]

Gene ID: 101098298, updated on 8-Mar-2024

Summary

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Official Symbol
SHROOM3
Official Full Name
shroom family member 3
Primary source
VGNC:VGNC:65134
See related
EnsemblRapid:ENSFCTG00005016402
Gene type
protein coding
RefSeq status
MODEL
Organism
Felis catus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: B1
Exon count:
17
Annotation release Status Assembly Chr Location
105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) B1 NC_058371.1 (142823785..143150817, complement)
104 previous assembly Felis_catus_9.0 (GCF_000181335.3) B1 NC_018726.3 (145363222..145700255, complement)

Chromosome B1 - NC_058371.1Genomic Context describing neighboring genes Neighboring gene sosondowah ankyrin repeat domain family member B Neighboring gene farnesyl pyrophosphate synthase-like Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene small nucleolar RNA SNORA3/SNORA45 family Neighboring gene uncharacterized LOC123385033 Neighboring gene coiled-coil domain containing 158 Neighboring gene starch binding domain 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cortical actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Shroom3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference F.catus_Fca126_mat1.0 Primary Assembly

Genomic

  1. NC_058371.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

    Range
    142823785..143150817 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045056183.1 → XP_044912118.1  protein Shroom3 isoform X1

    UniProtKB/TrEMBL
    M3WHS5
    Conserved Domains (3) summary
    PHA03247
    Location:1167 → 1665
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:851 → 1286
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:34 → 107
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_023253023.2 → XP_023108791.2  protein Shroom3 isoform X2

    UniProtKB/TrEMBL
    M3WHS5
    Conserved Domains (3) summary
    PHA03247
    Location:1167 → 1664
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:851 → 1286
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:34 → 107
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  3. XM_023253022.2 → XP_023108790.2  protein Shroom3 isoform X1

    UniProtKB/TrEMBL
    M3WHS5
    Related
    ENSFCTP00005034264.1, ENSFCTT00005047591.1
    Conserved Domains (3) summary
    PHA03247
    Location:1167 → 1665
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:851 → 1286
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:34 → 107
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  4. XM_023253027.2 → XP_023108795.2  protein Shroom3 isoform X5

    UniProtKB/TrEMBL
    A0A5F5XQ79
    Conserved Domains (3) summary
    PHA03247
    Location:991 → 1489
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:675 → 1110
    PHA03307; transcriptional regulator ICP4; Provisional
    PRK03918
    Location:1597 → 1783
    PRK03918; DNA double-strand break repair ATPase Rad50

  5. XM_023253028.2 → XP_023108796.2  protein Shroom3 isoform X5

    UniProtKB/TrEMBL
    A0A5F5XQ79
    Conserved Domains (3) summary
    PHA03247
    Location:991 → 1489
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:675 → 1110
    PHA03307; transcriptional regulator ICP4; Provisional
    PRK03918
    Location:1597 → 1783
    PRK03918; DNA double-strand break repair ATPase Rad50

  6. XM_045056184.1 → XP_044912119.1  protein Shroom3 isoform X3

    UniProtKB/TrEMBL
    A0A2I2V0F2
    Related
    ENSFCTP00005033865.1, ENSFCTT00005047123.1
    Conserved Domains (3) summary
    PHA03247
    Location:1113 → 1611
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:797 → 1232
    PHA03307; transcriptional regulator ICP4; Provisional
    PRK03918
    Location:1719 → 1905
    PRK03918; DNA double-strand break repair ATPase Rad50

  7. XM_023253025.2 → XP_023108793.2  protein Shroom3 isoform X5

    UniProtKB/TrEMBL
    A0A5F5XQ79
    Related
    ENSFCTP00005034057.1, ENSFCTT00005047346.1
    Conserved Domains (3) summary
    PHA03247
    Location:991 → 1489
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:675 → 1110
    PHA03307; transcriptional regulator ICP4; Provisional
    PRK03918
    Location:1597 → 1783
    PRK03918; DNA double-strand break repair ATPase Rad50

  8. XM_023253024.2 → XP_023108792.2  protein Shroom3 isoform X4

    UniProtKB/TrEMBL
    A0A5F5XQ79
    Related
    ENSFCTP00005033677.1, ENSFCTT00005046915.1
    Conserved Domains (3) summary
    PHA03247
    Location:1042 → 1540
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:726 → 1161
    PHA03307; transcriptional regulator ICP4; Provisional
    PRK03918
    Location:1648 → 1834
    PRK03918; DNA double-strand break repair ATPase Rad50
Nucleotide Protein
Heading Accession and Version

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