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CAPN6 calpain 6 [ Felis catus (domestic cat) ]

Gene ID: 101095474, updated on 8-Mar-2024

Summary

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Official Symbol
CAPN6
Official Full Name
calpain 6
Primary source
VGNC:VGNC:60356
See related
EnsemblRapid:ENSFCTG00005011326
Gene type
protein coding
RefSeq status
MODEL
Organism
Felis catus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
13
Annotation release Status Assembly Chr Location
105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) X NC_058386.1 (90593821..90617682, complement)
104 previous assembly Felis_catus_9.0 (GCF_000181335.3) X NC_018741.3 (93321132..93344989, complement)

Chromosome X - NC_058386.1Genomic Context describing neighboring genes Neighboring gene chordin like 1 Neighboring gene p21 (RAC1) activated kinase 3 Neighboring gene doublecortin Neighboring gene serine rich and transmembrane domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference F.catus_Fca126_mat1.0 Primary Assembly

Genomic

  1. NC_058386.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

    Range
    90593821..90617682 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004000803.5 → XP_004000852.2  calpain-6

    UniProtKB/TrEMBL
    A0A5F5XX37
    Related
    ENSFCTP00005020944.1, ENSFCTT00005031715.1
    Conserved Domains (3) summary
    smart00230
    Location:13 → 351
    CysPc; Calpain-like thiol protease family
    cd04046
    Location:514 → 639
    C2_Calpain; C2 domain present in Calpain proteins
    cd00214
    Location:353 → 497
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
Nucleotide Protein
Heading Accession and Version

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