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RXRA retinoid X receptor alpha [ Felis catus (domestic cat) ]

Gene ID: 101085757, updated on 8-Mar-2024

Summary

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Official Symbol
RXRA
Official Full Name
retinoid X receptor alpha
Primary source
VGNC:VGNC:64834
See related
EnsemblRapid:ENSFCTG00005001051
Gene type
protein coding
RefSeq status
MODEL
Organism
Felis catus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: D4
Exon count:
14
Annotation release Status Assembly Chr Location
105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) D4 NC_058380.1 (93869578..93965624, complement)
104 previous assembly Felis_catus_9.0 (GCF_000181335.3) D4 NC_018735.3 (93466511..93562557, complement)

Chromosome D4 - NC_058380.1Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC123381563 Neighboring gene uncharacterized LOC109494039 Neighboring gene lysine-specific demethylase 6B-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables retinoic acid-responsive element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to retinoic acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoic acid receptor RXR-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference F.catus_Fca126_mat1.0 Primary Assembly

Genomic

  1. NC_058380.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

    Range
    93869578..93965624 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023242953.2 → XP_023098721.1  retinoic acid receptor RXR-alpha isoform X2

    UniProtKB/TrEMBL
    A0A2I2UEY0, M3VYH3
    Related
    ENSFCTP00005001602.1, ENSFCTT00005002730.1
    Conserved Domains (3) summary
    cd06943
    Location:234 → 445
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:138 → 214
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:18 → 131
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  2. XM_006939617.5 → XP_006939679.3  retinoic acid receptor RXR-alpha isoform X1

    UniProtKB/TrEMBL
    A0A2I2U0T0, A0A2I2UEY0
    Related
    ENSFCTP00005001601.1, ENSFCTT00005002727.1
    Conserved Domains (3) summary
    cd06943
    Location:243 → 454
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:147 → 223
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:27 → 140
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  3. XM_019816734.3 → XP_019672293.1  retinoic acid receptor RXR-alpha isoform X3

    UniProtKB/TrEMBL
    A0A2I2UEY0
    Related
    ENSFCTP00005001595.1, ENSFCTT00005002717.1
    Conserved Domains (3) summary
    cd06943
    Location:206 → 417
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:110 → 186
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:1 → 103
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  4. XM_045043845.1 → XP_044899780.1  retinoic acid receptor RXR-alpha isoform X3

    UniProtKB/TrEMBL
    A0A2I2UEY0
    Conserved Domains (3) summary
    cd06943
    Location:206 → 417
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:110 → 186
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:1 → 103
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  5. XM_045043846.1 → XP_044899781.1  retinoic acid receptor RXR-alpha isoform X4

    Conserved Domains (3) summary
    cd06943
    Location:132 → 343
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:36 → 112
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:1 → 29
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

RNA

  1. XR_002737717.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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