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znf652 zinc finger protein 652 [ Takifugu rubripes (torafugu) ]

Gene ID: 101076717, updated on 8-Mar-2024

Summary

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Gene symbol
znf652
Gene description
zinc finger protein 652
See related
Ensembl:ENSTRUG00000016405
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
human zebrafish all
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Genomic context

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See znf652 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 5 NC_042289.1 (11924747..11936859)
101 previous assembly FUGU5 (GCF_000180615.1) 5 NC_018894.1 (10342950..10355016)

Chromosome 5 - NC_042289.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101076487 Neighboring gene prohibitin Neighboring gene phosphoethanolamine/phosphocholine phosphatase 1 Neighboring gene elongation factor Tu GTP binding domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 652

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042289.1 Reference fTakRub1.2 Primary Assembly

    Range
    11924747..11936859
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003964898.3 → XP_003964947.3  zinc finger protein 652

    UniProtKB/TrEMBL
    H2UYB0
    Conserved Domains (5) summary
    PLN03086
    Location:283 → 347
    PLN03086; PRLI-interacting factor K; Provisional
    COG5189
    Location:480 → 531
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:430 → 450
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam03154
    Location:580 → 682
    Atrophin-1; Atrophin-1 family
    pfam13465
    Location:498 → 522
    zf-H2C2_2; Zinc-finger double domain

  2. XM_011604188.2 → XP_011602490.2  zinc finger protein 652

    UniProtKB/TrEMBL
    H2UYB0
    Related
    ENSTRUP00000041939.3, ENSTRUT00000042083.3
    Conserved Domains (5) summary
    PLN03086
    Location:283 → 347
    PLN03086; PRLI-interacting factor K; Provisional
    COG5189
    Location:480 → 531
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:430 → 450
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam03154
    Location:580 → 682
    Atrophin-1; Atrophin-1 family
    pfam13465
    Location:498 → 522
    zf-H2C2_2; Zinc-finger double domain

  3. XM_011604186.2 → XP_011602488.2  zinc finger protein 652

    UniProtKB/TrEMBL
    H2UYB0
    Conserved Domains (5) summary
    PLN03086
    Location:283 → 347
    PLN03086; PRLI-interacting factor K; Provisional
    COG5189
    Location:480 → 531
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:430 → 450
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam03154
    Location:580 → 682
    Atrophin-1; Atrophin-1 family
    pfam13465
    Location:498 → 522
    zf-H2C2_2; Zinc-finger double domain

RNA

  1. XR_003888461.1 RNA Sequence

    Related
    ENSTRUT00000050834.2
Nucleotide Protein
Heading Accession and Version

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