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cnot4a CCR4-NOT transcription complex, subunit 4a [ Takifugu rubripes (torafugu) ]

Gene ID: 101074792, updated on 8-Mar-2024

Summary

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Gene symbol
cnot4a
Gene description
CCR4-NOT transcription complex, subunit 4a
See related
Ensembl:ENSTRUG00000016861
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Also known as
cnot4
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 9
Exon count:
13
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 9 NC_042293.1 (12633558..12640642)
101 previous assembly FUGU5 (GCF_000180615.1) 9 NC_018898.1 (11423861..11429686)

Chromosome 9 - NC_042293.1Genomic Context describing neighboring genes Neighboring gene troponin I, slow skeletal muscle-like Neighboring gene uncharacterized LOC101068240 Neighboring gene potassium voltage-gated channel subfamily A member 1-like Neighboring gene shaker-related potassium channel tsha2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042293.1 Reference fTakRub1.2 Primary Assembly

    Range
    12633558..12640642
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011607510.2 → XP_011605812.1  CCR4-NOT transcription complex subunit 4

    See identical proteins and their annotated locations for XP_011605812.1

    UniProtKB/TrEMBL
    A0A674P6V5, H2V1X5
    Related
    ENSTRUP00000043205.1, ENSTRUT00000043350.3
    Conserved Domains (1) summary
    COG5175
    Location:3 → 233
    MOT2; Transcriptional repressor [Transcription]

  2. XM_003967500.3 → XP_003967549.1  CCR4-NOT transcription complex subunit 4

    See identical proteins and their annotated locations for XP_003967549.1

    UniProtKB/TrEMBL
    A0A674P6V5, H2V1X5
    Conserved Domains (1) summary
    COG5175
    Location:3 → 233
    MOT2; Transcriptional repressor [Transcription]
Nucleotide Protein
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