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rbfox1 RNA binding fox-1 homolog 1 [ Takifugu rubripes (torafugu) ]

Gene ID: 101073060, updated on 8-Mar-2024

Summary

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Gene symbol
rbfox1
Gene description
RNA binding fox-1 homolog 1
See related
Ensembl:ENSTRUG00000020940
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 5
Exon count:
19
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 5 NC_042289.1 (908667..1112094, complement)
101 previous assembly FUGU5 (GCF_000180615.1) 5 NC_018894.1 (2485310..2571366, complement)

Chromosome 5 - NC_042289.1Genomic Context describing neighboring genes Neighboring gene monocarboxylate transporter 7 Neighboring gene junction plakoglobin-like Neighboring gene uncharacterized mitochondrial protein AtMg00860-like Neighboring gene uncharacterized LOC105416406 Neighboring gene serine/threonine-protein kinase BRSK2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA binding protein fox-1 homolog 1
Names
RNA binding protein, fox-1 homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042289.1 Reference fTakRub1.2 Primary Assembly

    Range
    908667..1112094 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029836328.1 → XP_029692188.1  RNA binding protein fox-1 homolog 1 isoform X3

    Conserved Domains (2) summary
    cd12407
    Location:133 → 208
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:242 → 330
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal

  2. XM_029836329.1 → XP_029692189.1  RNA binding protein fox-1 homolog 1 isoform X3

    Conserved Domains (2) summary
    cd12407
    Location:133 → 208
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:242 → 330
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal

  3. XM_029836330.1 → XP_029692190.1  RNA binding protein fox-1 homolog 1 isoform X3

    Conserved Domains (2) summary
    cd12407
    Location:133 → 208
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:242 → 330
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal

  4. XM_011603666.2 → XP_011601968.2  RNA binding protein fox-1 homolog 1 isoform X2

    Conserved Domains (2) summary
    cd12407
    Location:155 → 230
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:264 → 352
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal

  5. XM_029836336.1 → XP_029692196.1  RNA binding protein fox-1 homolog 1 isoform X10

    Conserved Domains (2) summary
    COG0724
    Location:138 → 295
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12407
    Location:156 → 231
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins

  6. XM_029836333.1 → XP_029692193.1  RNA binding protein fox-1 homolog 1 isoform X7

    Conserved Domains (2) summary
    cd12407
    Location:156 → 231
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:265 → 353
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal

  7. XM_029836327.1 → XP_029692187.1  RNA binding protein fox-1 homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A3B5KLN4
    Related
    ENSTRUP00000054299.2, ENSTRUT00000056555.2
    Conserved Domains (2) summary
    cd12407
    Location:156 → 231
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:265 → 353
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal

  8. XM_029836331.1 → XP_029692191.1  RNA binding protein fox-1 homolog 1 isoform X4

    Conserved Domains (2) summary
    cd12407
    Location:133 → 208
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:242 → 330
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal

  9. XM_003964340.3 → XP_003964389.1  RNA binding protein fox-1 homolog 1 isoform X6

    UniProtKB/TrEMBL
    A0A3B5K9S6
    Related
    ENSTRUP00000052719.1, ENSTRUT00000054869.2
    Conserved Domains (2) summary
    cd12407
    Location:128 → 203
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:237 → 325
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal

  10. XM_029836335.1 → XP_029692195.1  RNA binding protein fox-1 homolog 1 isoform X9

    Conserved Domains (2) summary
    COG0724
    Location:138 → 295
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12407
    Location:156 → 231
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins

  11. XM_029836334.1 → XP_029692194.1  RNA binding protein fox-1 homolog 1 isoform X8

    Conserved Domains (2) summary
    COG0724
    Location:138 → 295
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12407
    Location:156 → 231
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins

  12. XM_029836332.1 → XP_029692192.1  RNA binding protein fox-1 homolog 1 isoform X5

    Conserved Domains (2) summary
    cd12407
    Location:156 → 231
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:265 → 353
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
Nucleotide Protein
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