U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

upf3b UPF3B regulator of nonsense mediated mRNA decay [ Takifugu rubripes (torafugu) ]

Gene ID: 101071745, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
upf3b
Gene description
UPF3B regulator of nonsense mediated mRNA decay
See related
Ensembl:ENSTRUG00000010645
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 14
Exon count:
10
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 14 NC_042298.1 (10681682..10685072)
101 previous assembly FUGU5 (GCF_000180615.1) 14 NC_018903.1 (8428918..8432370)

Chromosome 14 - NC_042298.1Genomic Context describing neighboring genes Neighboring gene NFKB activating protein Neighboring gene NADH:ubiquinone oxidoreductase subunit A1 Neighboring gene ribosomal protein L39 Neighboring gene sosondowah ankyrin repeat domain family d

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
regulator of nonsense transcripts 3B
Names
UPF3 regulator of nonsense transcripts homolog B

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042298.1 Reference fTakRub1.2 Primary Assembly

    Range
    10681682..10685072
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003970606.3 → XP_003970655.2  regulator of nonsense transcripts 3B

    UniProtKB/TrEMBL
    H2TQB5
    Related
    ENSTRUP00000026872.3, ENSTRUT00000026981.3
    Conserved Domains (2) summary
    TIGR01642
    Location:292 → 425
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    pfam03467
    Location:34 → 193
    Smg4_UPF3; Smg-4/UPF3 family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.