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alkbh3 alkB homolog 3, alpha-ketoglutarate dependent dioxygenase [ Takifugu rubripes (torafugu) ]

Gene ID: 101068007, updated on 11-Apr-2024

Summary

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Gene symbol
alkbh3
Gene description
alkB homolog 3, alpha-ketoglutarate dependent dioxygenase
See related
Ensembl:ENSTRUG00000021459
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 9
Exon count:
11
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 9 NC_042293.1 (6151885..6155457, complement)
101 previous assembly FUGU5 (GCF_000180615.1) 9 NC_018898.1 (5067261..5070795, complement)

Chromosome 9 - NC_042293.1Genomic Context describing neighboring genes Neighboring gene creatine kinase U-type, mitochondrial Neighboring gene TopBP1-interacting, checkpoint, and replication regulator Neighboring gene hydroxysteroid (17-beta) dehydrogenase 12a Neighboring gene uncharacterized LOC115251066 Neighboring gene putative protein TPRXL Neighboring gene microRNA mir-129-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA alkylation repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-ketoglutarate-dependent dioxygenase alkB homolog 3
Names
alkB homolog 3, alpha-ketoglutaratedependent dioxygenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042293.1 Reference fTakRub1.2 Primary Assembly

    Range
    6151885..6155457 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029842009.1 → XP_029697869.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X4

    UniProtKB/TrEMBL
    A0A3B5KJM1
    Related
    ENSTRUP00000056295.2, ENSTRUT00000058187.2

  2. XM_029842008.1 → XP_029697868.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X3

    UniProtKB/TrEMBL
    A0A3B5KPY6

  3. XM_029842006.1 → XP_029697866.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X2

    UniProtKB/TrEMBL
    A0A3B5KPY6
    Conserved Domains (1) summary
    pfam13532
    Location:89 → 274
    2OG-FeII_Oxy_2; 2OG-Fe(II) oxygenase superfamily

  4. XM_011607060.2 → XP_011605362.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X1

    See identical proteins and their annotated locations for XP_011605362.1

    UniProtKB/TrEMBL
    A0A3B5KPY6
    Conserved Domains (1) summary
    pfam13532
    Location:90 → 275
    2OG-FeII_Oxy_2; 2OG-Fe(II) oxygenase superfamily

  5. XM_029842007.1 → XP_029697867.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X3

    UniProtKB/TrEMBL
    A0A3B5KPY6

  6. XM_003967241.3 → XP_003967290.2  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X2

    UniProtKB/TrEMBL
    A0A3B5KPY6
    Conserved Domains (1) summary
    pfam13532
    Location:89 → 274
    2OG-FeII_Oxy_2; 2OG-Fe(II) oxygenase superfamily

  7. XM_011607059.2 → XP_011605361.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X1

    See identical proteins and their annotated locations for XP_011605361.1

    UniProtKB/TrEMBL
    A0A3B5KPY6
    Related
    ENSTRUP00000055430.2, ENSTRUT00000057236.2
    Conserved Domains (1) summary
    pfam13532
    Location:90 → 275
    2OG-FeII_Oxy_2; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
Heading Accession and Version

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