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xpa xeroderma pigmentosum, complementation group A [ Takifugu rubripes (torafugu) ]

Gene ID: 101067859, updated on 8-Mar-2024

Summary

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Gene symbol
xpa
Gene description
xeroderma pigmentosum, complementation group A
See related
Ensembl:ENSTRUG00000027763
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 17
Exon count:
5
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 17 NC_042301.1 (15179865..15181388)
101 previous assembly FUGU5 (GCF_000180615.1) 17 NC_018906.1 (9618590..9620083)

Chromosome 17 - NC_042301.1Genomic Context describing neighboring genes Neighboring gene histone H3 Neighboring gene sodium/potassium/calcium exchanger 2-like Neighboring gene karyopherin alpha 7 (importin alpha 8) Neighboring gene fibroblast growth factor 20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UV-damage excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in base-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair involved in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair, DNA damage recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleotide-excision repair factor 1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA repair protein complementing XP-A cells
Names
DNA repair protein complementing XP-A cells homolog
XPA, DNA damage recognition and repair factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042301.1 Reference fTakRub1.2 Primary Assembly

    Range
    15179865..15181388
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003972574.3 → XP_003972623.2  DNA repair protein complementing XP-A cells

    UniProtKB/TrEMBL
    A0A3B5KB96, H2UR40
    Related
    ENSTRUP00000039413.3, ENSTRUT00000039554.3
    Conserved Domains (1) summary
    TIGR00598
    Location:105 → 275
    rad14; DNA repair protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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