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hmgb1b high mobility group box 1b [ Takifugu rubripes (torafugu) ]

Gene ID: 101067170, updated on 8-Mar-2024

Summary

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Gene symbol
hmgb1b
Gene description
high mobility group box 1b
See related
Ensembl:ENSTRUG00000004822
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Also known as
hmgb1
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 11
Exon count:
5
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 11 NC_042295.1 (12208554..12211185, complement)
101 previous assembly FUGU5 (GCF_000180615.1) 11 NC_018900.1 (7528287..7530958, complement)

Chromosome 11 - NC_042295.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 52E8 Neighboring gene protocadherin Fat 4-like Neighboring gene WD40 repeat domain 95 Neighboring gene beta 3-glucosyltransferase a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding, bending IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high mobility group protein B1
Names
high mobility group box 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042295.1 Reference fTakRub1.2 Primary Assembly

    Range
    12208554..12211185 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029844313.1 → XP_029700173.1  high mobility group protein B1

    UniProtKB/TrEMBL
    H2SGJ3
    Conserved Domains (2) summary
    pfam00505
    Location:94 → 161
    HMG_box; HMG (high mobility group) box
    pfam09011
    Location:5 → 77
    HMG_box_2; HMG-box domain

  2. XM_003968570.3 → XP_003968619.1  high mobility group protein B1

    UniProtKB/TrEMBL
    H2SGJ3
    Related
    ENSTRUP00000011525.2, ENSTRUT00000011585.3
    Conserved Domains (2) summary
    pfam00505
    Location:94 → 161
    HMG_box; HMG (high mobility group) box
    pfam09011
    Location:5 → 77
    HMG_box_2; HMG-box domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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