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afap1 actin filament associated protein 1 [ Takifugu rubripes (torafugu) ]

Gene ID: 101062316, updated on 8-Mar-2024

Summary

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Gene symbol
afap1
Gene description
actin filament associated protein 1
See related
Ensembl:ENSTRUG00000009616
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 8
Exon count:
19
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 8 NC_042292.1 (10278314..10303038)
101 previous assembly FUGU5 (GCF_000180615.1) 8 NC_018897.1 (8640548..8656632)

Chromosome 8 - NC_042292.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase TRIM39-like Neighboring gene zinc finger, CCHC domain containing 4 Neighboring gene actin binding LIM protein family, member 2 Neighboring gene sortilin-related VPS10 domain containing receptor 2 Neighboring gene GrpE-like 1, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SH2 domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SH3 domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
actin filament-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042292.1 Reference fTakRub1.2 Primary Assembly

    Range
    10278314..10303038
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029840315.1 → XP_029696175.1  actin filament-associated protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A674MD41, H2THL1
    Related
    ENSTRUP00000058903.1, ENSTRUT00000059168.1
    Conserved Domains (2) summary
    cd13306
    Location:148 → 253
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:348 → 447
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2

  2. XM_029840313.1 → XP_029696173.1  actin filament-associated protein 1 isoform X1

    UniProtKB/TrEMBL
    H2THL1
    Related
    ENSTRUP00000024161.3, ENSTRUT00000024260.3
    Conserved Domains (2) summary
    cd13306
    Location:151 → 256
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:351 → 450
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2

  3. XM_011606464.2 → XP_011604766.2  actin filament-associated protein 1 isoform X3

    UniProtKB/TrEMBL
    H2THL2
    Conserved Domains (2) summary
    cd13306
    Location:151 → 256
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:351 → 450
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
Nucleotide Protein
Heading Accession and Version

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